BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61590.1
Length=887
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496326 jgi|Araly1|496326|fgenesh2_kg.8__2142__AT5G61590.1 1238 0.0
> Ahg496326 jgi|Araly1|496326|fgenesh2_kg.8__2142__AT5G61590.1
Length=838
Score = 1238 bits (670), Expect = 0.0
Identities = 765/809 (95%), Gaps = 14/809 (2%)
Strand=Plus/Plus
Query 67 ATGGAGACTTTTGAGGAAAGCTCTGATTTGGATGTTATACAGAAACATCTATTTGAAGAC 126
|||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 44 ATGGCGACTTTTGAGGAAAGCTCTGATCTGGATGTTATACAGAAACATCTGTTTGAAGAC 103
Query 127 TTGATGATCCCTGATGGTTTCATTGAAGATTTTGTCTTTGATGATACTGCTTTTGTCTCC 186
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 104 TTGATGATCCCTGATGGTTTTATTGAAGATTTTGTCTTTGATGATACTGCTTTTGTCTCA 163
Query 187 GGACTCTGGTCTCTAGAACCCTTTAACCCAGTTCCGAAACTGGAACCTAGTTCACCTGTT 246
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 164 GGACTCTGGTCTTTAGAACCCTTTAACCCAGTTCCTAAACTGGAACCTAGTTCACCTG-- 221
Query 247 CTTGATCCAGATTCCTATGTCCAAGAGATTCTGCAAATGGAAGCAGAatcatcatcatca 306
| |||||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 222 --T--TCCAGATTCCTATGTCCAAGAGTTTCTGCAAATGGAAGCAG-A--ATCATCATCA 274
Query 307 tcatcaACAACAACGTCACCTGAGGTTGAGACTGTCTCAAACCGGaaaaaaaCAAAGAGG 366
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 275 TCATCAACAACAACATCACCTGAGGTTGAGACTGTCTCAAACCGAAAAAAAACAAAGAGG 334
Query 367 TTTGAAGAAACGAGACATTACAGAGGCGTGAGAAGGAGGCCATGGGGGAAATTTGCAGCA 426
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TTTGAAGAGACGAGACATTACAGAGGCGTGAGAAGGAGGCCATGGGGGAAATTTGCAGCA 394
Query 427 GAGATTCGAGATCCGGCAAAGAAAGGATCCAGGATTTGGTTAGGCACTTTTGAGAGTGAT 486
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 GAGATTCGAGATCCCGCGAAGAAAGGATCCAGGATTTGGTTAGGCACTTTTGAGAGTGAT 454
Query 487 ATTGATGCTGCAAGGGCTTACGACTATGCAGCTTTTAAGCTCAGGGGAAGAAAAGCTGTT 546
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 455 ATTGATGCTGCAAGAGCTTATGACTATGCAGCTTTTAAGCTCAGGGGAAGAAAAGCTGTC 514
Query 547 CTCAACTTTCCTTTGGATGCCGGAAAGTATGATGCTCCGGTCAATTCATGCCGAAAAAGG 606
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 515 CTCAATTTTCCTTTGGATGCCGGGAAGTATGATGCTCCGGTCAATTCATGCCGAAAAAGG 574
Query 607 AGGAGAACCGATGTACCACAGCCTCAAGGAACAACAACAAGTACTTCATCATCGTCATCA 666
||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 575 AGGAGAAGCGATGTACCGCAGCCTCAAGGAACAACAACGAGTACTTCATCATCATCATCA 634
Query 667 AACTAATGGGGGAATAGTGATGTTTAATTAGTATATATAGGTTAATATCTTAAGTATGTG 726
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 635 AACTAATGGG--AATAGTGATGTTTAATTAGTATATATAGGTTAATCTCTTAAGTATGTG 692
Query 727 AAGCATCATGTATAGAGCCAAGAACCTGTTAGACTAGTGTACTGAAAAGAACTCTTGCAA 786
|||||| ||||||||||||||| | ||||| |||||||||||||| |||||||||||
Sbjct 693 AAGCAT---GTATAGAGCCAAGAAAATATTAGATTAGTGTACTGAAAAAAACTCTTGCAA 749
Query 787 AATATGTACTAAAGAGTTCCTGTAACAATGGAACTTCTGCGTTTTCTCTTGTCTTAAAGA 846
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 750 AATATGTACTAAAGAGTTCCTGTAACAATGGAACTTCTGTGTTTTCTCATGTCTTAAAGA 809
Query 847 GCTTAAGGTTCTAGAAACAAAGTTCTTGT 875
|||||||||||||||||||||||||||||
Sbjct 810 GCTTAAGGTTCTAGAAACAAAGTTCTTGT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32861954454
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5