BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61600.1
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496327 jgi|Araly1|496327|fgenesh2_kg.8__2143__AT5G61600.1 1480 0.0
> Ahg496327 jgi|Araly1|496327|fgenesh2_kg.8__2143__AT5G61600.1
Length=1042
Score = 1480 bits (801), Expect = 0.0
Identities = 970/1049 (92%), Gaps = 22/1049 (2%)
Strand=Plus/Plus
Query 1 ATTCCCACTTCCACACATACACATATACAACAGAGC---AAGAGAGTCAATCAAG-T-A- 54
|||||||||||||||||||||||||||||||||| | |||||||||||||||| | |
Sbjct 1 ATTCCCACTTCCACACATACACATATACAACAGATCAATAAGAGAGTCAATCAAGTTAAC 60
Query 55 ---GAGTGAAGATGGCAACTAAACAAGAAGCTTTAGCCATCGATTTCATAAGCCAACACC 111
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 61 TTGGAGTGAAGATGGCAACTAAACAAGAAGCTTTAGCTATCGAATTCATAAGCCAACACC 120
Query 112 TTCTCACAGACTTTGTTTCCATGGAAACTGATCACCCATCTCTTTTTACCAACCAACTTC 171
||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 121 TTCTCACAGACTTTGCTTCCATGGAAACTG---ACCCATCTCTTTTTACCAATCAAGTTC 177
Query 172 ACAACTTTCACTCAGAAACAGGCCCTAGAACCATCACCAACCAATCCCCTAAACCGAATT 231
|||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| |
Sbjct 178 ACAACTTTCACTCAGAAACAAGCCCTAGAACCATCAGCAACCAGTCCCCTAAACCGAACT 237
Query 232 CGACTCTTAACCAGCGTAAACCGCCCTTACCGAATCTATCCGTCTCGAGAACGGTTTCAA 291
|||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||
Sbjct 238 CGACTCTTAACCAGCGTAAACCGCCCTTACCGAATCTATCCGTCCCAAGAATGGTCTCAA 297
Query 292 CAAAGACAGAGAAAGAGGA--A-GAAGAGAGGCACTACAGGGGAGTGAGACGAAGACCGT 348
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 298 CAAAGACAGAGAAAGAGGAGGAGGAAGAGAGGCACTACAGGGGAGTGAGACGAAGACCGT 357
Query 349 GGGGAAAATACGCGGCGGAGATTAGGGATCCGAACAAAAAGGGTTGTAGGATCTGGCTTG 408
|||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||||||
Sbjct 358 GGGGAAAATATGCGGCGGAGATTAGAGATCCGAACAAAAAGGGTTCTAGGATTTGGCTTG 417
Query 409 GGACTTACGACACTGCCGTGGAAGCTGGAAGAGCTTATGACCAAGCGGCGTTTCAATTAC 468
||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 418 GGACTTACGACACGGCCGTGGAAGCTGCAAGAGCTTATGACCAAGCAGCGTTTCAATTGC 477
Query 469 GTGGAAGAAAAGCAATCTTGAATTTCCCTCTCGATGTTAGGGTTACGTCAGAAACTTGTT 528
||||||||||||||||||||||||| ||||||||| |||||| ||||| ||||||||||
Sbjct 478 GTGGAAGAAAAGCAATCTTGAATTTTCCTCTCGATATTAGGGCAACGTCCGAAACTTGTT 537
Query 529 CTGGGGAAGGAGTTATCGGATTAGGGAAACGAAAGCGAGATAAGGGTTCTCCGCCGGAAG 588
|| |||||||| |||| |||||| |||||||||| | |||| ||||||||||||| |
Sbjct 538 TTGAGGAAGGAGCCGTCGGGTTAGGGCAACGAAAGCGGGTTAAGAGTTCTCCGCCGGAGG 597
Query 589 AGGAGAA-G-G-CGGCTAGGGTTAAAGTGGAGGAAGAAGAGAGTAATACGTCGGAGACGA 645
||||||| | | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGGAGAAGGAGAAGGTTAGGGTTAAAGTGGAGGAAGAAGAGAGTAATACGTCGGAGACGA 657
Query 646 CGGAGGCTGAGGTTGAGCCGGTGGTACCATTGACGCCGTCAAGTTGGATGGGGTTTTGGG 705
||||||| |||||||| || |||||| |||||||||||||||||||||||||||||||
Sbjct 658 CGGAGGCAGAGGTTGA---GGCGGTACCTTTGACGCCGTCAAGTTGGATGGGGTTTTGGG 714
Query 706 ATGTGGGAGCAGGAGATGGTATTTTCAGTATTCCTCCGTTATCTCCGACGTCTCCCAACT 765
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 715 ATGTGGGAGCAGGAGATGGGATCTTCAGTATTCCTCAGTTATCTCCGACGTCTCCCAACT 774
Query 766 TTTCCGTTATCTCCGTCACTTAAAACTTCGGAAAAGTCAACGTACGATGACGTTTTCACT 825
| ||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 775 TCTCCGTTATCACCGTCACTT-GAACTTCGGAAAAGTCAACGGACGATGACGTTTTCACT 833
Query 826 TGCGTCACTCTCATGATTTCATTTATTCTTGTATAATATAAAGGTAGCGGTAGTGTGCAA 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TGCGTCACTCTCATGATTTCATTTATTCTTGTATAATATAAAGGTAGCGGTAGTGTGCAA 893
Query 886 ATATCAAATAAGTAGTTTAATTAGTACCAATCATTTTATTCATTAttttttttAGTAGAA 945
||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||
Sbjct 894 ATATCAAATAAGTAGTTTAATTAGTACCAATCATTTTATTCATTAATTTTCTTAGAAGAA 953
Query 946 TATTTGGATGTTGAAAATATAAATTTAATTTTGTATTTGTTGATGTTATAAATTTATTGA 1005
|||||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||
Sbjct 954 TATTTGGATGTTGAAAATATGAACTGAATTTTGTATTCGTTGATGTTATAAATTTATTGA 1013
Query 1006 TTGTATAAACATTCTTAGTCATCAGTTTC 1034
|||||||||||||||||||||||||||||
Sbjct 1014 TTGTATAAACATTCTTAGTCATCAGTTTC 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38885375340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5