BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G61605.1

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496328 jgi|Araly1|496328|fgenesh2_kg.8__2144__AT5G61605.1         462    1e-129


> Ahg496328 jgi|Araly1|496328|fgenesh2_kg.8__2144__AT5G61605.1
Length=405

 Score =  462 bits (250),  Expect = 1e-129
 Identities = 369/423 (87%), Gaps = 21/423 (5%)
 Strand=Plus/Plus

Query  6    ATAACAAACAACGTTTCGGTATAATTTTAAGAAGAATATATCACAACAACAATGTCATCA  65
            ||| ||||||||||||| ||||   ||||||||| | ||||  | |||||||||||||||
Sbjct  1    ATAGCAAACAACGTTTCTGTAT--CTTTAAGAAG-A-ATAT--C-ACAACAATGTCATCA  53

Query  66   TTATATTTTGCTATCCTTTGCCTCTTCATGATTTTCCTCGTTCCTTTACATGAATTTGGA  125
            | | |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  54   TCACATTTTGCTATACTTTGCGTCTTCATGATTTTCCTCGTTCCTCTACATGAATTTGGA  113

Query  126  AACGCACAAGGTTCTGAGGCGGAGCTGCAATTAGATCCATCAATGTGTCTGCGTGT-CGA  184
            ||||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||| |  
Sbjct  114  AACGCACAAGGTTCTGAAGCGGGGCTGCAATTAGATCCATCACTGTGTGTGCGTGTAC-T  172

Query  185  ATGTGCAAAACACAGAAATCAAAAATGGTGTTTTTGCTGTGCCGGACTACCGAGGACCTG  244
            ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct  173  ATGTGCAAAACACAGAAATCAAAAATGGTGTTTTTGCTGTGGCGGACAACCGAAGACCTG  232

Query  245  TTTTCTTGATAAACGAGGCTGTACGTCTGTCTGCAAGCGCGAATCTCCTTCAATGGCTTA  304
            ||||||| |||||| |||||||||| ||||||||||| ||  ||||||||||||||||||
Sbjct  233  TTTTCTTAATAAACAAGGCTGTACGGCTGTCTGCAAGAGCCCATCTCCTTCAATGGCTTA  292

Query  305  AGAAACTTGAAGAACCCATATCTACAATTTACTAATTACGTTTAAATTTCTCTTGATATA  364
            ||||||| ||||||||||| | ||| |||||||  | || |||   ||||||||||||||
Sbjct  293  AGAAACTCGAAGAACCCATGTATACTATTTACT--T-ACTTTTTT-TTTCTCTTGATATA  348

Query  365  TGAATA--AATATAAGTTTATGGAAAGGAAACAATTACGATTATGCTTATCGTAATTTAA  422
            ||||||  |||| |  |  ||  |||||||||||  || |||||||||||||||||||||
Sbjct  349  TGAATATGAATACA--T--AT--AAAGGAAACAAACACAATTATGCTTATCGTAATTTAA  402

Query  423  CAT  425
            |||
Sbjct  403  CAT  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19650128335


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5