BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61610.1
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496329 jgi|Araly1|496329|fgenesh2_kg.8__2145__AT5G61610.1 968 0.0
> Ahg496329 jgi|Araly1|496329|fgenesh2_kg.8__2145__AT5G61610.1
Length=675
Score = 968 bits (524), Expect = 0.0
Identities = 620/668 (93%), Gaps = 0/668 (0%)
Strand=Plus/Plus
Query 1 ATGCATTTCTTTGGCACGAAAGACAAAGCTCCTATTTATGCCGGTATAGCCGTCGTATCC 60
||||||||||| |||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 1 ATGCATTTCTTCGGCACGAAAGGCAAACCTCCTCTTTATGCCGGTATAGCCGTCGTATCC 60
Query 61 TTCATGATCCTCACCGGTTTAACCTTTGCCGGTACGGCCGTGGCTCTAACCGTTATGATA 120
||||||||||||| |||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct 61 CTCATGATCCTCACTGGTTTAACTTTTGCCGGTACTGCCGTGACTCTAACCGTTATGATG 120
Query 121 CCGGTTTTGGTGGTTCTTAGTCCGATTCTCGTACCGGCGGTAATCACATCGAGTTTCTTG 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCGGTTTTGGTGGTTCTTAGTCCGATTCTCGTACCGGCGGTAATCACTTCGAGTTTCTTG 180
Query 181 GCAACGGGGTTCCTAGCTTCTGGTAGCCTCGGAGCATTGGGGATCGCCCTCCTCATATGG 240
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 181 GCAACGGGGTTCTTAGCTTCTGGTAGCCTCGGAGCATCCGGGATCGCCCTCCTCATCTGG 240
Query 241 CTCTACAAGAAAGAAGAGTATTCCAGAGCTACTTTGCATGCACGAGGAGGTAGGCCTGAT 300
|||||||| ||||||||| ||||||||| |||| ||||||| ||||||| |||||||||
Sbjct 241 CTCTACAACAAAGAAGAGCATTCCAGAGATACTCTGCATGCGCGAGGAGCTAGGCCTGAA 300
Query 301 GGGCCTAACAAGCTGGCAGAAAGTGGCAAGCAATCAGGAGGAGATAATCCGTTGAAGGAA 360
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 301 GGGCCTAACAAGCTGGCAGAAAGTGGCAAGCAGTCAGGAGGAGATAATCTGTTGAAGGAA 360
Query 361 GACAAGCCGCCAGAAAGAGATAAGCTGCCGAGAAAAGACAAGCCATCCAAGGAAGACAAT 420
|| ||||||||||||||||| ||| ||||||||| |||||||||||| ||||||||||||
Sbjct 361 GATAAGCCGCCAGAAAGAGACAAGTTGCCGAGAAGAGACAAGCCATCAAAGGAAGACAAT 420
Query 421 CTGCTGAAAGGAGATAAGCCGGTCGAGGAGGATAAATTGCCGGCTGAGGAAGAAAAACCG 480
|||||||||||||||| | |||||||||||| ||||||||||| |||||||| |||||
Sbjct 421 ATGCTGAAAGGAGATAAACTGGTCGAGGAGGACAAATTGCCGGCGGAGGAAGACAAACCA 480
Query 481 CCACAAAAAGATAAACCGGCGGAGGGACACAAACCGCCACAAAAAGATAAACCGGCGGAA 540
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||
Sbjct 481 CCACAAAAAGATAAACCGGTGGAGGGAGACAAACCGCCACAAAAAGATAAACCGGTGGAA 540
Query 541 GGAGATAAACCGGTGGAGGAAGACAAACCGCCACAAAAAGATAAACCGGCGGAAGGAGAT 600
|||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 GGAGATAAGCCGGCGGAGGAAGACAAACCGCCACAAAAAGATAAATCGGCGGAAGGAGAA 600
Query 601 AAGCATGTGGAAGAAGATATGCCTTTAGGAGGAGTTGAGCATTTGTCAATCCCTGAGATA 660
||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 601 AAGCATGTGGAAGAAGATATGTCTTTAGGAGGAGTTAAGCAAATGTCAATCCCTGAGATA 660
Query 661 CCAAAGGT 668
|||||||
Sbjct 661 TCAAAGGT 668
Score = 106 bits (57), Expect = 3e-22
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 543 AGATAAACCGGTGGAGGAAGACAAACCGCCACAAAAAGATAAACCGGCGGAAGGAGATAA 602
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 489 AGATAAACCGGTGGAGGGAGACAAACCGCCACAAAAAGATAAACCGGTGGAAGGAGATAA 548
Query 603 GCATGTGGAAGAAGA 617
|| | ||| |||||
Sbjct 549 GCCGGCGGAGGAAGA 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5