BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61620.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496330 jgi|Araly1|496330|fgenesh2_kg.8__2146__AT5G61620.1 1352 0.0
> Ahg496330 jgi|Araly1|496330|fgenesh2_kg.8__2146__AT5G61620.1
Length=966
Score = 1352 bits (732), Expect = 0.0
Identities = 901/977 (92%), Gaps = 34/977 (3%)
Strand=Plus/Plus
Query 1 ATGGTGAAGGAGACGGTGACGGTGGCGAAAACGTGCTCACACTGTGGCCATAATGGCCAT 60
||||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1 ATGGTGAAGGAGACGGTGATGGTAGCGAAGACGTGCTCACACTGTGGCCACAATGGCCAT 60
Query 61 AACGCACGGACTTGTCTCAACGGCGTTAATAAGGCAAGTGTTAAACTGTTCGGCGTTAAT 120
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 AACGCACGGACTTGTCTTAACGGCGTTAATAAGGGAAGTGTTAAACTGTTCGGCGTTAAT 120
Query 121 ATATCGTCTGATCCGATTAGGCCGCCTGAGGTAACGGCGTTAAGGAAGAGTCTTAGTTTG 180
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 121 ATATCTTCTGATCCGATTAGGCCGCCTGAGGTGACGGCGTTAAGGAAGAGTCTCAGTTTG 180
Query 181 GGAAACCTTGATGCTCTTCTCGCTAACGATGAAAGTAACGGTAGCGGTGATCCTATCGCC 240
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 181 GGAAACCTTGATGCTCTTCTCGCTAACGATGACAGTAACGGTAACGGTGATCCTATCGCC 240
Query 241 GCCGTTGATGATACCGGTTATCATTCCGATGGTCAGATTCATTCCAAGAAGGGTAAAACT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCGTTGATGATACCGGTTATCATTCCGATGGTCAGATTCATTCCAAGAAGGGTAAAACT 300
Query 301 GCTCATGAGAAGAAAAAGGGGAAGCCATGGACGGAAGAAGAACATCGTAATTTCTTAATC 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 GCTCATGAGAAGAAAAAGGGGAAGCCATGGACGGAAGAAGAACATCGGAATTTCTTAATT 360
Query 361 GGTTTAAACAAACTCGGAAAAGGAGATTGGAGAGGCATTGCAAAGAGTTTCGTGTCGACA 420
||||| || |||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 361 GGTTTGAATAAACTCGGAAAAGGAGATTGGAGAGGAATTGCAAAGAGTTTCGTGACGACA 420
Query 421 AGAACACCAACACAAGTCGCAAGTCATGCTCAGAAATATTTTATTAGGTTAAACGTTAAC 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 AGAACACCAACACAAGTCGCAAGTCATGCTCAAAAATATTTTATTAGGTTAAACGTTAAC 480
Query 481 GACAAGAGAAAAAGACGTGCTAGTCTCTTTGACATCTCTCTCGAAGATCAGAAGGAGAAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GACAAGAGAAAAAGACGTGCTAGTCTCTTTGACATCTCTCTCGAAGATCAGAAGGAAAAA 540
Query 541 GAGAGGAACTCTCAAGATGCTTCAACA-----A--A--GACTCCACCTAAACAACCAATA 591
|||| ||| ||||||||||| |||||| | | ||||||||||||||||||||||
Sbjct 541 GAGATGAATTCTCAAGATGCATCAACATCTTCATCAAAGACTCCACCTAAACAACCAATA 600
Query 592 ACCGGAATTCAACAACCGGTAGTACAAGGTCATACTCAAACCGAGATTTCGAACAGGTTT 651
|||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 601 ACCGGAATTCAACAACCGGTGGTACAAGGTCAGACCCATACCGAGATTTCGAACAGGTTT 660
Query 652 CAGAATTTATCAATGGAGTATATGCCAATCTACCAACCCATACCACCTTACTACAACTTT 711
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 661 CAGAGTTTATCAATGGAGTATATGCCAATCTACCAAACCGTACCACCTTACTACAACTTT 720
Query 712 CCACCTATTATGTACCATCCAAATTATCCAATGTACTAT-GCCAAC-CCTCAAGTACCGG 769
|||||| |||||| |||| | |||||||||||| || | | ||| |||||||||
Sbjct 721 CCACCTCTTATGT----TCCA--T---CCAATGTACTATAGC-A-CTCCTGAAGTACCGG 769
Query 770 TTAGGTTTGTTCATCCTTCTGGTATACCTGTTCCAAGACATATACCGATTGGTTTGCCTC 829
||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct 770 TTAGGTTTGTTCATCCTTCTGGTATACCTGTACCAAGGCATATACCGATTGGTATGCCTC 829
Query 830 TGTCTCAACCGAGTGAAGCTTCTAATATGACAAATAAAGACGGTTTGGATCTTCATATCG 889
||||| ||| ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 830 AATCTCAGTCGAATGAAGCTTCTAATATGACAAAGAAAGACGGTTTGGATCTTGATATCG 889
Query 890 GTTTGCCTCCAC-------A-A-GCTACT---GGAGCTTCTGACTTGACTGGTCATGGCG 937
|||||||||||| | | |||||| |||||| |||||||||||||||||||||
Sbjct 890 GTTTGCCTCCACCTCTTCCACAAGCTACTACCGGAGCTACTGACTTGACTGGTCATGGCG 949
Query 938 TTATTCATGTGAAATGA 954
|||||||||||||||||
Sbjct 950 TTATTCATGTGAAATGA 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5