BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G61630.1

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg496331 jgi|Araly1|496331|fgenesh2_kg.8__2147__AT5G61630.1         898    0.0  


> Ahg496331 jgi|Araly1|496331|fgenesh2_kg.8__2147__AT5G61630.1
Length=579

 Score =  898 bits (486),  Expect = 0.0
 Identities = 553/584 (95%), Gaps = 10/584 (2%)
 Strand=Plus/Plus

Query  1    ATGTATAGATCCGCGAGCTGGAACCGAGTGCCAGAAGACTACTCATCCGCACCGCCTAAG  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTATAGATCTGCGAGCTGGAACCGAGTGCCAGAAGACTACTCATCCGCACCGCCTAAG  60

Query  61   GGATTGTGGATGGGCTCGGTGATCGGTCCCCTCGACGAGAACGAACTACCTTCCTACAAT  120
            ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   GGATTGTGGATGGGCTCAGTGATCGGTCCCCTTGACGAGAACGAACTACCTTCCTACAAT  120

Query  121  AATCCACCAGAGGAGATGGTTAAGAAGGAGAAGTCACGTGCCAAATTCGCAGAAAACGCC  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  121  AATCCACCAGAGGAGATGGTTAAGAAGGAGAAGTCACGTGCCAAATTCGCAGAAAACGCT  180

Query  181  ATTCACATCATACCATTTGTTCTCCTTGCATGCGCTCTCGTACTTTGGCTCTTCTCAAAT  240
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ATTCACATCATACCTTTTGTTCTCCTTGCATGCGCTCTCGTACTTTGGCTCTTCTCAAAT  240

Query  241  CCAGATGTGGATGTTGGGATGAGAGAAGAATCTATTGCGGCTAAGATTGAAGGATTGACG  300
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  241  CCAGATGTGGATGTTGGGATGAGAGAAGAATCTATTGCAGCTAAGATTGAAGGATTGACG  300

Query  301  ATCGAAGGAGACATCGACAATGATAGCGATGGAACTCAGACCGGTTTCTTGGGTGCCACC  360
            ||||||||||||||||| || || || ||||||||||||||||||||||||||||| |||
Sbjct  301  ATCGAAGGAGACATCGATAACGACAGTGATGGAACTCAGACCGGTTTCTTGGGTGCAACC  360

Query  361  TTAGAACTCGGAGATCCTGACAAACCAAACCTCACTGATAGAACCAGACGAGCTTCTAGG  420
            ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||
Sbjct  361  TTAGAACTCGGAGATCCTGACAAACCAAACCTCACTGATAGGACCAGAAGAGCTTCAAGG  420

Query  421  AAATTGATCAAAGGATTTTACTAGTTAA-TCAACACCAtttt-tttAA-TTTTCTCCCAA  477
            |||||||||||| | ||||||||||||| | || |||||||| |||   |||| ||||||
Sbjct  421  AAATTGATCAAACGTTTTTACTAGTTAACT-AA-ACCATTTTCTTTTTCTTTT-TCCCAA  477

Query  478  TGAATGTTGATTTTACTCAATAAACTTCACCAAAACTAAGAttttttttgttttgttttt  537
            ||||||||||||||| ||||||||||| |||||||||| ||||||||  |||||||||||
Sbjct  478  TGAATGTTGATTTTAATCAATAAACTTTACCAAAACTATGATTTTTT--GTTTTGTTTTT  535

Query  538  GGTTGA-TAAAGAAGCAGCTAAATATAAATCCAAATATATCTAT  580
            ||| || |||||||||||||||||||||||||||||||||||||
Sbjct  536  GGT-GAATAAAGAAGCAGCTAAATATAAATCCAAATATATCTAT  578



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21596063374


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5