BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G61630.1 Length=590 Score E Sequences producing significant alignments: (Bits) Value Ahg496331 jgi|Araly1|496331|fgenesh2_kg.8__2147__AT5G61630.1 898 0.0 > Ahg496331 jgi|Araly1|496331|fgenesh2_kg.8__2147__AT5G61630.1 Length=579 Score = 898 bits (486), Expect = 0.0 Identities = 553/584 (95%), Gaps = 10/584 (2%) Strand=Plus/Plus Query 1 ATGTATAGATCCGCGAGCTGGAACCGAGTGCCAGAAGACTACTCATCCGCACCGCCTAAG 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTATAGATCTGCGAGCTGGAACCGAGTGCCAGAAGACTACTCATCCGCACCGCCTAAG 60 Query 61 GGATTGTGGATGGGCTCGGTGATCGGTCCCCTCGACGAGAACGAACTACCTTCCTACAAT 120 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 61 GGATTGTGGATGGGCTCAGTGATCGGTCCCCTTGACGAGAACGAACTACCTTCCTACAAT 120 Query 121 AATCCACCAGAGGAGATGGTTAAGAAGGAGAAGTCACGTGCCAAATTCGCAGAAAACGCC 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AATCCACCAGAGGAGATGGTTAAGAAGGAGAAGTCACGTGCCAAATTCGCAGAAAACGCT 180 Query 181 ATTCACATCATACCATTTGTTCTCCTTGCATGCGCTCTCGTACTTTGGCTCTTCTCAAAT 240 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ATTCACATCATACCTTTTGTTCTCCTTGCATGCGCTCTCGTACTTTGGCTCTTCTCAAAT 240 Query 241 CCAGATGTGGATGTTGGGATGAGAGAAGAATCTATTGCGGCTAAGATTGAAGGATTGACG 300 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 CCAGATGTGGATGTTGGGATGAGAGAAGAATCTATTGCAGCTAAGATTGAAGGATTGACG 300 Query 301 ATCGAAGGAGACATCGACAATGATAGCGATGGAACTCAGACCGGTTTCTTGGGTGCCACC 360 ||||||||||||||||| || || || ||||||||||||||||||||||||||||| ||| Sbjct 301 ATCGAAGGAGACATCGATAACGACAGTGATGGAACTCAGACCGGTTTCTTGGGTGCAACC 360 Query 361 TTAGAACTCGGAGATCCTGACAAACCAAACCTCACTGATAGAACCAGACGAGCTTCTAGG 420 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| Sbjct 361 TTAGAACTCGGAGATCCTGACAAACCAAACCTCACTGATAGGACCAGAAGAGCTTCAAGG 420 Query 421 AAATTGATCAAAGGATTTTACTAGTTAA-TCAACACCAtttt-tttAA-TTTTCTCCCAA 477 |||||||||||| | ||||||||||||| | || |||||||| ||| |||| |||||| Sbjct 421 AAATTGATCAAACGTTTTTACTAGTTAACT-AA-ACCATTTTCTTTTTCTTTT-TCCCAA 477 Query 478 TGAATGTTGATTTTACTCAATAAACTTCACCAAAACTAAGAttttttttgttttgttttt 537 ||||||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||| Sbjct 478 TGAATGTTGATTTTAATCAATAAACTTTACCAAAACTATGATTTTTT--GTTTTGTTTTT 535 Query 538 GGTTGA-TAAAGAAGCAGCTAAATATAAATCCAAATATATCTAT 580 ||| || ||||||||||||||||||||||||||||||||||||| Sbjct 536 GGT-GAATAAAGAAGCAGCTAAATATAAATCCAAATATATCTAT 578 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21596063374 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5