BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61650.1
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497503 jgi|Araly1|497503|fgenesh2_kg.653__1__AT5G61650.1 1125 0.0
> Ahg497503 jgi|Araly1|497503|fgenesh2_kg.653__1__AT5G61650.1
Length=766
Score = 1125 bits (609), Expect = 0.0
Identities = 719/770 (93%), Gaps = 16/770 (2%)
Strand=Plus/Plus
Query 1 CTTTTCTTCCGTC-ATTCGAATGGCTGATCAGATTGAGATCCAGAGAATGAACCAAGATC 59
|||||||||| || | ||||||||||||||||||| ||||||||| |||||| |||||||
Sbjct 1 CTTTTCTTCCATCGA-TCGAATGGCTGATCAGATTCAGATCCAGACAATGAATCAAGATC 59
Query 60 TTCAAGAACCATTGGCTGAGATCATGCCAAGTGTTTTAACGGCAATGTCGTATCTCTTGC 119
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 TTGAAGAACCAATGGCTGAGATCATGCCAAGTGTTTTAACGGCAATGTCGTATCTGTTGC 119
Query 120 AAAGAGTATCGGAGACCAACGACAACCTGAGCCAGAAACAGAAGCCCTCAAGCTTCACTG 179
||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct 120 AAAGAGTATCGGAGACCAACGACAAGCTGAGCCAGAAACAGAGGATCTCAAGCTTCACTG 179
Query 180 GAGTAACCAAACCTTCCATTTCCATCAGAAGCTATCTCGA-ACGGATCTTTGAA-TACGC 237
|| ||||||||||||||||||||||||||||||||||||| | ||||| || || |||||
Sbjct 180 GACTAACCAAACCTTCCATTTCCATCAGAAGCTATCTCGAGA-GGATC-TTCAATTACGC 237
Query 238 GAATTGTAGCTACTCGTGTTACATCGTCGCATATATATATTTGGATCGGTTCGTGAAGAA 297
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 238 GAATTGTAGCTATTCGTGTTACATCGTCGCGTATATATATTTGGATCGGTTCGTGAAGAA 297
Query 298 GCAGCCATTTTTGCCTATCAATTCTTTTAATGTCCATAGGCTTATAATCACAAGTGTCTT 357
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||
Sbjct 298 GCAGCCATTTTTGCCTATCAATTCCTTCAATGTGCATAGGCTTATAATCACAAGTGTTTT 357
Query 358 GGTCTCTGCTAAATTCATGGATGACTTGAGTTACAACAATGAATATTATGCAAAAGTTGG 417
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 358 GGTCTCTGCTAAATTCATGGATGACTTGAGTTACAACAATGGATATTATGCAAAAGTTGG 417
Query 418 AGGAATAAGCAGAGAAGAAATGAACATGCTTGAGCTTGACTTCTTGTTCGGAATTGGGTT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 418 AGGAATAAGCAGAGAAGAAATGAACATGCTTGAGCTTGACTTCTTGTTCGGAATCGGGTT 477
Query 478 TGAGTTAAACGTCACCGTTTCTACTTTCAATAACTATTGTTGTTTTCTACAAAGAGAGAT 537
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 TCAGTTAAACGTCACCGTTTCTACTTTCAATAACTACTGTTGTTTTCTACAAAGAGAGAT 537
Query 538 GGCGATGTTGATGAAGATGAAGTCTCTGTTTCTTGAACCTTCT-T--CATTCAAAATCTC 594
|| |||||||| ||||||||||||||||||||| ||||||||| | ||||||||| |||
Sbjct 538 GGGGATGTTGACGAAGATGAAGTCTCTGTTTCTAGAACCTTCTCTTTCATTCAAAAGCTC 597
Query 595 TTCTAAGACGAAACTTGTGATGTATCCACACGAGGAAGACTCTTTATCTACTCACCACAA 654
|||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||| |||||
Sbjct 598 TTCTAAGACGAAACTTCTGATGAATCCACACGAGGACGACTCTTTATCCACTCATCACAA 657
Query 655 CAAGAAGCAACTCGCTGCTGCTTGATTATATTTATGCATTGGGTCGT-TA-TCACGTTGT 712
|||||||||||||||||||||||||| |||||||||||||||||||| || |||| ||||
Sbjct 658 CAAGAAGCAACTCGCTGCTGCTTGATCATATTTATGCATTGGGTCGTATAATCACATTGT 717
Query 713 -GTG-A-TGTAAAACCTT-TTTATATATCCGAGGGTTCTTGATTAGTGAT 758
||| | ||||||||||| ||| ||| |||||||||||||||||||||||
Sbjct 718 TGTGTACTGTAAAACCTTCTTT-TATGTCCGAGGGTTCTTGATTAGTGAT 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27944098161
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5