BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G61660.1

Length=716
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952372 jgi|Araly1|952372|scaffold_65300002.1                      619    7e-177


> Ahg952372 jgi|Araly1|952372|scaffold_65300002.1
Length=463

 Score =  619 bits (335),  Expect = 7e-177
 Identities = 424/464 (91%), Gaps = 17/464 (4%)
 Strand=Plus/Plus

Query  48   AACCCTAAGAATATATCGAAAATGATCAAAGGGCTCTTGTTGGtttttttctttttAATC  107
            |||||||| || | || |||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    AACCCTAAAAAAAGATAGAAAATGATCAAAGGGTTCTTGTTGGTTTTTTTCTTTTTAATC  60

Query  108  ACTGCAAAGACTTCTGTTTCACGTCCGTTTGCATGGTCGAGAGGTAACAT-----G-C--  159
            |||||||||||||| ||||| |||||||| ||||||||||| ||||||||     | |  
Sbjct  61   ACTGCAAAGACTTCGGTTTCCCGTCCGTTCGCATGGTCGAGGGGTAACATGCCAGGCCAA  120

Query  160  --C-A----GGCGAAAGTGGGTCGGGCCGTGGGCCGAATTGGGAGTACAATTGGGGTTGG  212
              | |    |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct  121  AACTACCCCGGCGAAAGTGGGTCGGGCCGTGGGCCCAATTGGGAGTACAACTGGGGTTGG  180

Query  213  GGCTCTGCTCCAGGATCTGGATGGGG-TTACGGGGCAGGCTCAGGTAGATCACCAACAGG  271
            |||||||||||||||||||||||||| || |||  ||||||| |||||||||||||||||
Sbjct  181  GGCTCTGCTCCAGGATCTGGATGGGGATT-CGGATCAGGCTCGGGTAGATCACCAACAGG  239

Query  272  ATGGGGAAGAGGATCCGGATACGGTTATGGATCTGGATCGGGATCAGGTACCGGGTATGG  331
            ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct  240  ATGGGGAAGAGGATCCGGATACGGTTATGGATCCGGATCCGGATCAGGTACCGGATATGG  299

Query  332  ATATGGTTCTGGAGGTGGTGGAGCACgtggtggtggatatggttacggaagcggaaatgg  391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  ATATGGTTCTGGAGGTGGTGGAGCACGTGGTGGTGGATATGGTTACGGAAGCGGAAATGG  359

Query  392  tcggtctggtggcggtggtggtggtggtggtTTCAACGGTGAAGTTGCCGCTTTGAGCCA  451
             ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  360  CCGGTCTGGTGGAGGTGGTGGTGGTGGTGGTTCCAACGGTGAAGTTGCCGCTTTGAGCCA  419

Query  452  TGGTAGTAAGATTCATCCGTAAGGACGTTTGATTTGGTAATTTC  495
             |||||||||||||||||||||||| |||| |||||||||||||
Sbjct  420  CGGTAGTAAGATTCATCCGTAAGGATGTTTTATTTGGTAATTTC  463



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26342935647


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5