BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61680.1
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358371 jgi|Araly1|358371|fgenesh1_pg.C_scaffold_8002158 1712 0.0
> Ahg358371 jgi|Araly1|358371|fgenesh1_pg.C_scaffold_8002158
Length=1017
Score = 1712 bits (927), Expect = 0.0
Identities = 987/1017 (97%), Gaps = 0/1017 (0%)
Strand=Plus/Plus
Query 1 ATGGGATACAATTATGTGTCCCTCATAGTAACAATCCTGCTCGTGGTGATTACATCGCCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGATACAATTATGTGTCCCTCATAGTAACAATCCTGCTCGTGGTGATTACATCGCCC 60
Query 61 GTGGTTTTCGGTAACGATGCAGCACCAATTCCGGAGAACAAAGGCCGAATCGAGCAGTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGGTTTTCGGTAACGATGCAGCACCAATTCCGGAGAACAAAGGCCGAATCGAGCAGTGG 120
Query 121 TTCAACACCAACGTGAAACAAAATGGAAGAGGCCATTTCAAGACAATAACCGAAGCGATA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TTCAACACCAACGTGAAACAAAATGGAAGAGGCCATTTCAAGACAATAACCGAAGCAATA 180
Query 181 AATAGTGTACGGGCAGGGAACACTAGGCGTGTGATCATCAAGATAGGTCCTGGTGTATAC 240
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AACAGTGTACGGGCAGGGAACACTAGGCGTGTGATAATCAAGATAGGTCCTGGTGTATAC 240
Query 241 AAAGAGAAGGTCACGATAGATAGAAGCAAGCCATTCATCACACTGTACGGTCATCCAAAT 300
||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||
Sbjct 241 AAAGAGAAGGTCACGATAGATAGAAACAAGCCCTTCATCACACTTTATGGTCATCCAAAT 300
Query 301 GCAATGCCGGTATTGACATTCGACGGTACCGCAGCACAATATGGGACAGTCGATAGCGCA 360
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 301 GCAATGCCCGTATTGACATTCGATGGTACCGCAGCACAATATGGGACAGTTGATAGCGCA 360
Query 361 ACTCTCATTGTCTTGTCCGACTATTTCATGGCTGTTAACATCATCCTTAAGAATTCTGCG 420
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 ACTCTCATTGTCTTGTCAGACTATTTCATGGCTGTTAACATCATCGTTAAGAATTCTGCC 420
Query 421 CCTATGCCGGATGGTAAGAGGAAGGGAGCACAAGCTTTATCTATGAGAATCTCTGGCAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTATGCCGGATGGTAAGAGGAAGGGAGCACAAGCTTTATCTATGAGAATCTCTGGCAAC 480
Query 481 AAAGCAGCTTTCTACAACTGTAAATTTTACGGTTATCAAGACACGATTTGCGATGACACC 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 AAAGCAGCTTTCTACAACTGTAAATTTTACGGTTATCAAGACACGATTTGTGATGACACC 540
Query 541 GGAAACCATTTCTTCAAAGACTGCTACATCGAAGGCACATTTGATTTCATCTTTGGAAGC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGAAACCATTTCTTCAAAGACTGCTACATCGAAGGCACATTTGATTTCATCTTTGGAAGT 600
Query 601 GGACGCTCTCTGTACCTCGGTACACAACTAAACGTTGTGGGAGATGGAATCAGAGTGATC 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGACGCTCTCTATACCTCGGTACACAACTAAACGTTGTGGGAGATGGAATCAGAGTGATC 660
Query 661 ACAGCTCATGCGGGAAAAAGCGCTGCAGAGAAAAGCGGATACTCGTTCGTCCACTGCAAG 720
||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct 661 ACAGCTCATGCGGGAAAAAGCGCAGCAGAGAAAAGTGGATACTCATTCGTGCACTGCAAG 720
Query 721 GTTACAGGGACTGGAACCGGGATCTACTTGGGTCGATCATGGATGAGCCACCCCAAGGTT 780
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 721 GTTACAGGGACTGGAACCGGGATCTACTTGGGTCGAGCATGGATGAGCCACCCAAAGGTT 780
Query 781 GTTTATGCATACACGGATATGTCAAGTGTTGTGAACCCATCTGGATGGCAAGAAAACCGC 840
|||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 781 GTTTATGCATACACTGATATGTCAAGTGTCGTGAACCCATCCGGATGGCAAGAAAATCGC 840
Query 841 GAGGCCGGACGTGACAAGACGGTGTTCTATGGAGAATATAAGTGCACAGGAACAGGATCG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAGGCCGGACGTGACAAGACGGTGTTCTATGGAGAATATAAGTGCACAGGAACAGGATCG 900
Query 901 CACAAGGAGAAGAGAGTAAAGTATACACAAGACATTGATGACATAGAAGCTAAGTACTTC 960
||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 901 CACAAGGAGAAGAGAGTGAAGTATACACAAGACATTGACGACGTAGAAGCTAAGTACTTC 960
Query 961 ATCTCGCTTGGCTACATCCAAGGATCTAGCTGGCTCCTGCCTCCTCCTTCTTTCTAA 1017
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 ATCTCGCTTGGCTACATCCAAGGATCTAGCTGGCTCCTGCCTCCTCCCTCTTTCTAA 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37817933664
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5