BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61710.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470227 jgi|Araly1|470227|fgenesh2_kg.1__181__AT5G61710.1 556 6e-158
> Ahg470227 jgi|Araly1|470227|fgenesh2_kg.1__181__AT5G61710.1
Length=609
Score = 556 bits (301), Expect = 6e-158
Identities = 533/635 (84%), Gaps = 55/635 (9%)
Strand=Plus/Plus
Query 23 TTTCTTCAAGAAAACAAAAATCTCCCTCCAGGGAGAAGAttttttgtttttCCTTAAAAC 82
|||||||||||||||||||||||| |||| |||||||| |||||| |||||||| ||||
Sbjct 1 TTTCTTCAAGAAAACAAAAATCTCTCTCCCTGGAGAAGA-TTTTTGATTTTCCTT-AAAC 58
Query 83 TTTAAGTCATCTTTCTGAT-GGAGACAAGAA-ATCAGAATGGTGATCAATTAGAGATAGA 140
||| ||||||||||||| | |||| || | |||||||||| ||||||||||||||
Sbjct 59 TTTTCTTCATCTTTCTGATATTA-ACAA-AAGAAGAGAATGGTGAGCAATTAGAGATAGA 116
Query 141 GCAAATTAAATAAACAAGACGACTACCATGATGAAGAAGAAGAAAAAGTCATCACGTGGG 200
| | |||||||||||||| ||| || ||||||||||||| |||||||||||
Sbjct 117 G---A--AAATAAACAAGACG---ACC---AT---GAAGAAGAAAAAGCCATCACGTGGG 162
Query 201 ATGCACATGTTCTCCGTCGTCATGTTCATGCTCCGTCGTCGCC------G---GACCTCC 251
||||||||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 163 ATGCACATGTTCTCCGTCGTCATGTTCATGCTCCGTCGTCGCCGGAGGAGAAAGACCTTC 222
Query 252 AACACCAGGTTCTGGCGGCGTGTTGTTGAGTCCGTA-CGTAAAGTCCGTTCCGA-AATTA 309
||||||||||| ||||| || ||||||||||||||| || | || | | || | |
Sbjct 223 AACACCAGGTTTTGGCGACGAGTTGTTGAGTCCGTACCG-ACAG--AGATGGGAGGA-GA 278
Query 310 CGATAATGCCAGTGACGGA-GATGGGAGGA-GACGATGGTGATAATGAAGTTGATGATCG 367
|| | || | ||| | ||| || || || |||| |||| || | || |||||
Sbjct 279 CGGTGGTGATAATGA-TAACGAT--GATGATGATGATGATGATGATTCCG--GA-GATCG 332
Query 368 TTTATCGGAGACTATGGAGGTTTTCACGGCGCCTTCCTCTTCATCATCATCAGGAATCTC 427
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 333 TTTATCGGAGGCTATGGAGGTTTTCACGGCGGCTTCCTCTTCATCATCATCAGGAATCTC 392
Query 428 GGGATATGGATCAGCCATGTCCTTACGTGATTTGGACTATCCTtatgatgatgata-t-- 484
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
Sbjct 393 GGGATATGGATCAGCCATGTCCTTACGGGATTTGGATTATCCTTATGATGATGATATTGA 452
Query 485 t---------gatgaatgttatagtgatgtccaaggaggagatgatatgattgatgaGAA 535
| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 453 TGAGGAAGAAGATGAATGTTATAGTGATGTCGAAGGAGGAGATGATATGATTGATGAGAA 512
Query 536 AGCTGAGGAATTCATCGTCAGATTCTATGCGCAAATGAAGATGCAAAATCAGGTTTACAC 595
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 513 AGCTGAGGAATTCATCGTGAGGTTCTATGCGCAAATGAAGATGCAAAATCAGGTTTACAC 572
Query 596 TGATCGTTGCAAAGCCAAAGGGATACTGATGAATT 630
||||||||||||||||||||||||| |||||||||
Sbjct 573 TGATCGTTGCAAAGCCAAAGGGATAATGATGAATT 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5