BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61720.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496339 jgi|Araly1|496339|fgenesh2_kg.8__2155__AT5G61720.1 1917 0.0
Ahg950935 jgi|Araly1|950935|scaffold_802822.1 1882 0.0
> Ahg496339 jgi|Araly1|496339|fgenesh2_kg.8__2155__AT5G61720.1
Length=1327
Score = 1917 bits (1038), Expect = 0.0
Identities = 1159/1218 (95%), Gaps = 6/1218 (0%)
Strand=Plus/Plus
Query 24 TCGTTTTCCTGTACCTCTTTTAAGAATaaaaaaaaaaaaaaGAAATGGGAAAAATTTCAT 83
|||||| |||||||||| ||||||||| |||||| ||||| |||||||||||||||| |
Sbjct 1 TCGTTTCCCTGTACCTC-TTTAAGAAT--AAAAAAGAAAAA-AAATGGGAAAAATTTCGT 56
Query 84 TAGCGATATGTCTAACGTTGCTTGTCACATTAAGCACTGTTTATGAAACACAAGGGACGT 143
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 57 TAGCGGTATGTCTAACGTTGCTTGTCACATTAAGCACTGTTTATGAAACACAAGGGACGT 116
Query 144 TCTCATTACCCCTTTACTTGAAAAATTTCCCCAAACTGGGCAAAGACTATGAGGCTTTCG 203
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 117 TCTCATTACCCCTTTACTTGAAAAATTTCCCCAAAGTGGGCAAAGACTATGAGGCTTTCG 176
Query 204 CAAACAAAGGTATATCGGACTTTTTGGGTGACCTAGAGGGTATGTGTCCTAAAACCGCAG 263
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 177 CAAACAAAGGTATATCGGACTTCTTGGGTGAACTGGAGGGTATGTGTCCTAAAACCGCAG 236
Query 264 AGTTCAAGGATTTCTTTGAAAACTTGAAGGATTACATGGCCTTCTTCAATTCAGCAGCAC 323
|||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||| |||
Sbjct 237 AGTTCAAGGATTTCTTTGAAAAGTTGAAGGATTACATGGCCTCCTTCAATTCGGCATCAC 296
Query 324 CCGGGTCAAAAGACAACCAGTTCGAGATGTTC-GTAAAATCTGAAAAGCTGTTCAAGGCT 382
|||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 297 CCGGGTCAAAAGACAACCTGTTCGAGATGT-CAGTAAAATCTGAAAAGCTGTTCAAGGCT 355
Query 383 TTGTCTGCTTTCAACAGTAGTAAAGGCGGAACATCAGAGGATTCGTGGAAGCTGGTGGAT 442
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 356 ATGTCTGCTTTCAACAGTAGTAACGGCGGAACATCAGAGGATTCGTGGAAGCTGGTGGAT 415
Query 443 GGATTGTTGTCAATGGGTAAAGGTTTGGTTGAGATGAAGAAGAGCGGTTCGAAGGAGATA 502
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GGCTTGTTGTCAATGGGTAAAGGTTTGGTTGAGATGAAGAAGAGCGGTTCGAAGGAGATA 475
Query 503 ACTTTTGAAGAGAGAAGAGATCTGATCAGTTCTATGGTGAAATGGGCTAGAGCCATCGGT 562
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 476 ACTTTTGAACAGAGAAGAGATCTGATCAGTTCTATGGTGAAATGGGCTAGAGCTATCGGT 535
Query 563 CTATTCGTGAAGGCGGCCTCTGAAGATAAAGGACAGTCTATTGATCTGGCATCTTTTGGG 622
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 536 CTATTCGTGAAGGCGGCCTCTGAAGATAAAGGACAATCTATTGATCTGGCATCTTTTGGG 595
Query 623 ATTGACTATGACAACAATGTAGAATCCCCTTTTTCAAAAAGAGCTATGTATGAAACACAA 682
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 596 ATCGACTATGACAACCATGTAGAATCCCCTTTTTCAAAAAGAGCTATGTATGAAAAACAA 655
Query 683 GGAACGTTCTCATTACCTCATTACGTGAAGAATACCCCCAAAATGGGCAAAGCCATTGAG 742
||||||||||||||||| |||||| |||||||| |||||||||||||||||| |||||||
Sbjct 656 GGAACGTTCTCATTACCCCATTACTTGAAGAATGCCCCCAAAATGGGCAAAGACATTGAG 715
Query 743 CCTTTCGCTTACAAAGGTATGTCGGACTTCTTGGGTAGCCTAGAGAGCAAGTGTCCTGCG 802
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 716 CCTTTCGCTTACAATGGTATGTCGGACTTCTTGGGTAGCCTAGAGAGTAAGTGTCCTGCG 775
Query 803 ACACCAGAGTTCAAAGATTTCTTTGTAAAGTTGGAGGACTATATGGCCTGCTTCAAGTTG 862
|||||||||||| | ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 776 ACACCAGAGTTCCAGGATTTCTTTGTAAAGCTGGAGGACTACATGGCCTGCTTCAAGTTG 835
Query 863 GTATCACCCGAATCAAAATTCGAGATGGCAGTGAAATCGGATAAGCTCTTCACGGCTATG 922
|||||||||||||||||| ||| ||| |||||||||| || |||||||||| |||||||
Sbjct 836 GTATCACCCGAATCAAAAGACGACATGTCAGTGAAATCTGAGAAGCTCTTCAGGGCTATG 895
Query 923 ATTTCATTGGATGGTACTAAAGGCGGATCAGTGGATTCGTGGAGGATGCTTGATGGTATG 982
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 896 ATTTTATTGGATGGTACTAAAGGCGGAACAGTGGATTCGTGGAGGATGCTTGATGGTATG 955
Query 983 TTGTCAATGGGAAAAGTTTTGGTTGATATCAAGAAGAGCGGTTCCAAGGAGATAACTTTT 1042
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 956 TTGTCAATGGGAAAAGTTTTGGTTGAGATGAAGAAGAGCGGTTCCAAGGAGATAACTTTT 1015
Query 1043 GAACAGAGAAGAGATCTGATCAGCTCTATGGTGAAATGGGCTAGAGCTATCGGCCTATTC 1102
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1016 GAACAGAGAAGAGATCTGATCAGTTCTATGGTGAAATGGGCTAGAGCTATCGGTCTATTC 1075
Query 1103 GTGAAGGCGGCCTCTGAGCGTAAAGGAAAATCTATTGATCTAGCACCTTTTGGAATTGAT 1162
|||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||||
Sbjct 1076 GTGAAGACGGCCTCTGGGAATAAAGGAAAACCTATTGATCTAGCACCTTTTGGAATTGAT 1135
Query 1163 TATGAAAACAATGTCGGAAATGGAAAAGGTAACTTTAGAACCGGCCCTGTTCTCATAGAC 1222
||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 1136 TATGAAAACAATGTCGGAAATGGGAAAGGTAACTATAGAACCGGCCCTGTTCTGATAGAC 1195
Query 1223 GACGGCAGCGAGCTCTAA 1240
||||||||||||||||||
Sbjct 1196 GACGGCAGCGAGCTCTAA 1213
Score = 442 bits (239), Expect = 3e-123
Identities = 434/525 (83%), Gaps = 26/525 (5%)
Strand=Plus/Plus
Query 671 TATGAAACACAAGGAACGTTCTCATTACCTCATTACGTGAAGAATACCCCCAAAATGGGC 730
|||||||||||||| |||||||||||||| | |||| |||| ||| ||||||| |||||
Sbjct 98 TATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGAAAAATTTCCCCAAAGTGGGC 157
Query 731 AAAG-CCATTGAGCCTTTCGCTTACAAAGGTATGTCGGACTTCTTGGGTAG-CCTAGAGA 788
|||| | | |||| ||||||| |||||||||| ||||||||||||||| | || |||
Sbjct 158 AAAGACTA-TGAGGCTTTCGCAAACAAAGGTATATCGGACTTCTTGGGT-GAACTGGAGG 215
Query 789 GCAAGTGTCCTGCGACAC-CAGAGTTCAAAGATTTCTTTGTAAAGTTGGAGGACTATATG 847
| | ||||||| || | |||||||||| |||||||||| ||||||| |||| || |||
Sbjct 216 GTATGTGTCCTAAAAC-CGCAGAGTTCAAGGATTTCTTTGAAAAGTTGAAGGATTACATG 274
Query 848 GCCTGCTTCAAGTT-GGTATCACCCGAATC---A-A-AA----TTCGAGATGGCAGTGAA 897
|||| |||||| || || |||||||| || | | || ||||||||| |||| ||
Sbjct 275 GCCTCCTTCAA-TTCGGCATCACCCGGGTCAAAAGACAACCTGTTCGAGATGTCAGTAAA 333
Query 898 ATCGGATAAGCTCTTCACGGCTATGAT-TTCATTGGATGGTACTAAAGGCGG---ATCAG 953
||| || ||||| |||| ||||||| | | | || | ||| ||| ||||| |||||
Sbjct 334 ATCTGAAAAGCTGTTCAAGGCTATG-TCTGCTTTCAACAGTAGTAACGGCGGAACATCAG 392
Query 954 TGGATTCGTGGAGGATGCTTGATGG-TATGTTGTCAATGGGAAAAGTTTTGGTTGATATC 1012
||||||||||| | || | ||||| | ||||||||||||| |||| ||||||||| ||
Sbjct 393 AGGATTCGTGGAAGCTGGTGGATGGCT-TGTTGTCAATGGGTAAAGGTTTGGTTGAGATG 451
Query 1013 AAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGCTCTATG 1072
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 452 AAGAAGAGCGGTTCGAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGTTCTATG 511
Query 1073 GTGAAATGGGCTAGAGCTATCGGCCTATTCGTGAAGGCGGCCTCTGA-GCGTAAAGGAAA 1131
||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
Sbjct 512 GTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGGCGGCCTCTGAAGA-TAAAGGACA 570
Query 1132 ATCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGT 1176
|||||||||||| ||| ||||||| || || ||||| ||| ||||
Sbjct 571 ATCTATTGATCTGGCATCTTTTGGGATCGACTATGACAACCATGT 615
Score = 442 bits (239), Expect = 3e-123
Identities = 435/526 (83%), Gaps = 28/526 (5%)
Strand=Plus/Plus
Query 125 TATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGAAAAATTTCCCCAAACTGGGC 184
||||||| |||||| |||||||||||||||| ||||||||| ||| ||||||| |||||
Sbjct 644 TATGAAAAACAAGGAACGTTCTCATTACCCCATTACTTGAAGAATGCCCCCAAAATGGGC 703
Query 185 AAAGACTA-TGAGGCTTTCGCAAACAAAGGTATATCGGACTTTTTGGGTGA-CCTAGAGG 242
|||||| | |||| ||||||| |||| ||||| |||||||| |||||| | |||||||
Sbjct 704 AAAGAC-ATTGAGCCTTTCGCTTACAATGGTATGTCGGACTTCTTGGGT-AGCCTAGAGA 761
Query 243 GTATGTGTCCTAAAAC-CGCAGAGTTCAAGGATTTCTTTG-AAAACTTGAAGGATTACAT 300
||| ||||||| || | |||||||| |||||||||||| ||| | || |||| |||||
Sbjct 762 GTAAGTGTCCTGCGACAC-CAGAGTTCCAGGATTTCTTTGTAAAGC-TGGAGGACTACAT 819
Query 301 GGCCTTCTTCAA-TTCAGCAGCACCCGGGTCAAAAGACAACCAGTTCGAGATGTTCGTAA 359
||||| |||||| || | | |||||| ||||||||| | || | | | | | | |
Sbjct 820 GGCCTGCTTCAAGTT-GGTATCACCCGAATCAAAAGACGA-CA--T-GTCA-G-T-G--A 869
Query 360 AATCTGAAAAGCTGTTCAAGGCTTTGTCTGCT-TTCAACAGTAGTAAAGGCGGAACATCA 418
||||||| ||||| |||| |||| || | | || | ||| ||||||||| | | ||
Sbjct 870 AATCTGAGAAGCTCTTCAGGGCTATG-ATTTTATTGGATGGTACTAAAGGCGG-A-A-CA 925
Query 419 GAGGATTCGTGGAAGCTGGTGGATGGAT-TGTTGTCAATGGGTAAAGGTTTGGTTGAGAT 477
| ||||||||||| | || | ||||| | ||||||||||||| |||| ||||||||||||
Sbjct 926 GTGGATTCGTGGAGGATGCTTGATGG-TATGTTGTCAATGGGAAAAGTTTTGGTTGAGAT 984
Query 478 GAAGAAGAGCGGTTCGAAGGAGATAACTTTTGAAGAGAGAAGAGATCTGATCAGTTCTAT 537
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 985 GAAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGTTCTAT 1044
Query 538 GGTGAAATGGGCTAGAGCCATCGGTCTATTCGTGAAGGCGGCCTCTGAAGA-TAAAGGAC 596
|||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||
Sbjct 1045 GGTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGACGGCCTCTGG-GAATAAAGGAA 1103
Query 597 AGTCTATTGATCTGGCATCTTTTGGGATTGACTATGACAACAATGT 642
| |||||||||| ||| ||||||| ||||| ||||| ||||||||
Sbjct 1104 AACCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGT 1149
Score = 130 bits (70), Expect = 3e-29
Identities = 105/120 (88%), Gaps = 10/120 (8%)
Strand=Plus/Plus
Query 1288 ATATGGAGACAGCCCTGCTTTGTTAAACAGCAGCGTGCTGTAGAACATTTTTGGTTAT-T 1346
||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 1214 ATATGGAGACAGCCCTGCTTTGTTAAACAGCAGCGAGCTGTAGAACATTTTTGGCTATAT 1273
Query 1347 GTAAAAACTA-TAT--TAATCATATTACTAAAATAAAATTATTACAAATCTTAACTCGTT 1403
|| |||||| || |||||||||| || || ||| | ||||||||||||||||||||
Sbjct 1274 -TATAAACTAATAAACTAATCATATT--TATAA-AAA-T-ATTACAAATCTTAACTCGTT 1327
> Ahg950935 jgi|Araly1|950935|scaffold_802822.1
Length=1216
Score = 1882 bits (1019), Expect = 0.0
Identities = 1141/1200 (95%), Gaps = 8/1200 (1%)
Strand=Plus/Plus
Query 45 AAGAATaaaaaaaaaaaaaaGAAATGGGAAAAATTTCATTAGCGATATGTCTAACGTTGC 104
|||||| |||||| ||||| |||||||||||||||| |||||| |||||||||||||||
Sbjct 1 AAGAAT--AAAAAAGAAAAA-AAATGGGAAAAATTTCGTTAGCGGTATGTCTAACGTTGC 57
Query 105 TTGTCACATTAAGCACTGTTTATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGA 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TTGTCACATTAAGCACTGTTTATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGA 117
Query 165 AAAATTTCCCCAAACTGGGCAAAGACTATGAGGCTTTCGCAAACAAAGGTATATCGGACT 224
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AAAATTTCCCCAAAGTGGGCAAAGACTATGAGGCTTTCGCAAACAAAGGTATATCGGACT 177
Query 225 TTTTGGGTGACCTAGAGGGTATGTGTCCTAAAACCGCAGAGTTCAAGGATTTCTTTGAAA 284
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCTTGGGTGAACTGGAGGGTATGTGTCCTAAAACCGCAGAGTTCAAGGATTTCTTTGAAA 237
Query 285 ACTTGAAGGATTACATGGCCTTCTTCAATTCAGCAGCACCCGGGTCAAAAGACAACCAGT 344
| ||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||| ||
Sbjct 238 AGTTGAAGGATTACATGGCCTCCTTCAATTCGGCATCACCCGGGTCAAAAGACAACCTGT 297
Query 345 TCGAGATGTTC-GTAAAATCTGAAAAGCTGTTCAAGGCTTTGTCTGCTTTCAACAGTAGT 403
||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 298 TCGAGATGT-CAGTAAAATCTGAAAAGCTGTTCAAGGCTATGTCTGCTTTCAACAGTAGT 356
Query 404 AAAGGCGGAACATCAGAGGATTCGTGGAAGCTGGTGGATGGATTGTTGTCAATGGGTAAA 463
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 357 AACGGCGGAACATCAGAGGATTCGTGGAAGCTGGTGGATGGCTTGTTGTCAATGGGTAAA 416
Query 464 GGTTTGGTTGAGATGAAGAAGAGCGGTTCGAAGGAGATAACTTTTGAAGAGAGAAGAGAT 523
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 417 GGTTTGGTTGAGATGAAGAAGAGCGGTTCGAAGGAGATAACTTTTGAACAGAGAAGAGAT 476
Query 524 CTGATCAGTTCTATGGTGAAATGGGCTAGAGCCATCGGTCTATTCGTGAAGGCGGCCTCT 583
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 CTGATCAGTTCTATGGTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGGCGGCCTCT 536
Query 584 GAAGATAAAGGACAGTCTATTGATCTGGCATCTTTTGGGATTGACTATGACAACAATGTA 643
|||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 537 GAAGATAAAGGACAATCTATTGATCTGGCATCTTTTGGGATCGACTATGACAACCATGTA 596
Query 644 GAATCCCCTTTTTCAAAAAGAGCTATGTATGAAACACAAGGAACGTTCTCATTACCTCAT 703
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 597 GAATCCCCTTTTTCAAAAAGAGCTATGTATGAAAAACAAGGAACGTTCTCATTACCCCAT 656
Query 704 TACGTGAAGAATACCCCCAAAATGGGCAAAGCCATTGAGCCTTTCGCTTACAAAGGTATG 763
||| |||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 657 TACTTGAAGAATGCCCCCAAAATGGGCAAAGACATTGAGCCTTTCGCTTACAATGGTATG 716
Query 764 TCGGACTTCTTGGGTAGCCTAGAGAGCAAGTGTCCTGCGACACCAGAGTTCAAAGATTTC 823
|||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 717 TCGGACTTCTTGGGTAGCCTAGAGAGTAAGTGTCCTGCGACACCAGAGTTCCAGGATTTC 776
Query 824 TTTGTAAAGTTGGAGGACTATATGGCCTGCTTCAAGTTGGTATCACCCGAATCAAAATTC 883
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 777 TTTGTAAAGCTGGAGGACTACATGGCCTGCTTCAAGTTGGTATCACCCGAATCAAAAGAC 836
Query 884 GAGATGGCAGTGAAATCGGATAAGCTCTTCACGGCTATGATTTCATTGGATGGTACTAAA 943
|| ||| |||||||||| || |||||||||| ||||||||||| ||||||||||||||||
Sbjct 837 GACATGTCAGTGAAATCTGAGAAGCTCTTCAGGGCTATGATTTTATTGGATGGTACTAAA 896
Query 944 GGCGGA---TCAGTGGATTCGTGGAGGATGCTTGATGGTATGTTGTCAATGGGAAAAGTT 1000
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGCGGAACATCAGTGGATTCGTGGAGGATGCTTGATGGTATGTTGTCAATGGGAAAAGTT 956
Query 1001 TTGGTTGATATCAAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTG 1060
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTGGTTGAGATGAAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTG 1016
Query 1061 ATCAGCTCTATGGTGAAATGGGCTAGAGCTATCGGCCTATTCGTGAAGGCGGCCTCTGAG 1120
||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
Sbjct 1017 ATCAGTTCTATGGTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGACGGCCTCTGGG 1076
Query 1121 CGTAAAGGAAAATCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGTCGGA 1180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AATAAAGGAAAACCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGTCGGA 1136
Query 1181 AATGGAAAAGGTAACTTTAGAACCGGCCCTGTTCTCATAGACGACGGCAGCGAGCTCTAA 1240
||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1137 AATGGGAAAGGTAACTATAGAACCGGCCCTGTTCTGATAGACGACGGCAGCGAGCTCTAA 1196
Score = 460 bits (249), Expect = 9e-129
Identities = 438/526 (83%), Gaps = 25/526 (5%)
Strand=Plus/Plus
Query 125 TATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGAAAAATTTCCCCAAACTGGGC 184
||||||| |||||| |||||||||||||||| ||||||||| ||| ||||||| |||||
Sbjct 624 TATGAAAAACAAGGAACGTTCTCATTACCCCATTACTTGAAGAATGCCCCCAAAATGGGC 683
Query 185 AAAGACTA-TGAGGCTTTCGCAAACAAAGGTATATCGGACTTTTTGGGTGA-CCTAGAGG 242
|||||| | |||| ||||||| |||| ||||| |||||||| |||||| | |||||||
Sbjct 684 AAAGAC-ATTGAGCCTTTCGCTTACAATGGTATGTCGGACTTCTTGGGT-AGCCTAGAGA 741
Query 243 GTATGTGTCCTAAAAC-CGCAGAGTTCAAGGATTTCTTTG-AAAACTTGAAGGATTACAT 300
||| ||||||| || | |||||||| |||||||||||| ||| | || |||| |||||
Sbjct 742 GTAAGTGTCCTGCGACAC-CAGAGTTCCAGGATTTCTTTGTAAAGC-TGGAGGACTACAT 799
Query 301 GGCCTTCTTCAA-TTCAGCAGCACCCGGGTCAAAAGACAACCAGTTCGAGATGTTCGTAA 359
||||| |||||| || | | |||||| ||||||||| | || | | | | | | |
Sbjct 800 GGCCTGCTTCAAGTT-GGTATCACCCGAATCAAAAGACGA-CA--T-GTCA-G-T-G--A 849
Query 360 AATCTGAAAAGCTGTTCAAGGCTTTGTCTGCT-TTCAACAGTAGTAAAGGCGGAACATCA 418
||||||| ||||| |||| |||| || | | || | ||| ||||||||||||||||
Sbjct 850 AATCTGAGAAGCTCTTCAGGGCTATG-ATTTTATTGGATGGTACTAAAGGCGGAACATCA 908
Query 419 GAGGATTCGTGGAAGCTGGTGGATGGAT-TGTTGTCAATGGGTAAAGGTTTGGTTGAGAT 477
| ||||||||||| | || | ||||| | ||||||||||||| |||| ||||||||||||
Sbjct 909 GTGGATTCGTGGAGGATGCTTGATGG-TATGTTGTCAATGGGAAAAGTTTTGGTTGAGAT 967
Query 478 GAAGAAGAGCGGTTCGAAGGAGATAACTTTTGAAGAGAGAAGAGATCTGATCAGTTCTAT 537
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 968 GAAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGTTCTAT 1027
Query 538 GGTGAAATGGGCTAGAGCCATCGGTCTATTCGTGAAGGCGGCCTCTGAAGA-TAAAGGAC 596
|||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||
Sbjct 1028 GGTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGACGGCCTCTGG-GAATAAAGGAA 1086
Query 597 AGTCTATTGATCTGGCATCTTTTGGGATTGACTATGACAACAATGT 642
| |||||||||| ||| ||||||| ||||| ||||| ||||||||
Sbjct 1087 AACCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGT 1132
Score = 442 bits (239), Expect = 3e-123
Identities = 434/525 (83%), Gaps = 26/525 (5%)
Strand=Plus/Plus
Query 671 TATGAAACACAAGGAACGTTCTCATTACCTCATTACGTGAAGAATACCCCCAAAATGGGC 730
|||||||||||||| |||||||||||||| | |||| |||| ||| ||||||| |||||
Sbjct 78 TATGAAACACAAGGGACGTTCTCATTACCCCTTTACTTGAAAAATTTCCCCAAAGTGGGC 137
Query 731 AAAG-CCATTGAGCCTTTCGCTTACAAAGGTATGTCGGACTTCTTGGGTAG-CCTAGAGA 788
|||| | | |||| ||||||| |||||||||| ||||||||||||||| | || |||
Sbjct 138 AAAGACTA-TGAGGCTTTCGCAAACAAAGGTATATCGGACTTCTTGGGT-GAACTGGAGG 195
Query 789 GCAAGTGTCCTGCGACAC-CAGAGTTCAAAGATTTCTTTGTAAAGTTGGAGGACTATATG 847
| | ||||||| || | |||||||||| |||||||||| ||||||| |||| || |||
Sbjct 196 GTATGTGTCCTAAAAC-CGCAGAGTTCAAGGATTTCTTTGAAAAGTTGAAGGATTACATG 254
Query 848 GCCTGCTTCAAGTT-GGTATCACCCGAATC---A-A-AA----TTCGAGATGGCAGTGAA 897
|||| |||||| || || |||||||| || | | || ||||||||| |||| ||
Sbjct 255 GCCTCCTTCAA-TTCGGCATCACCCGGGTCAAAAGACAACCTGTTCGAGATGTCAGTAAA 313
Query 898 ATCGGATAAGCTCTTCACGGCTATGAT-TTCATTGGATGGTACTAAAGGCGG---ATCAG 953
||| || ||||| |||| ||||||| | | | || | ||| ||| ||||| |||||
Sbjct 314 ATCTGAAAAGCTGTTCAAGGCTATG-TCTGCTTTCAACAGTAGTAACGGCGGAACATCAG 372
Query 954 TGGATTCGTGGAGGATGCTTGATGG-TATGTTGTCAATGGGAAAAGTTTTGGTTGATATC 1012
||||||||||| | || | ||||| | ||||||||||||| |||| ||||||||| ||
Sbjct 373 AGGATTCGTGGAAGCTGGTGGATGGCT-TGTTGTCAATGGGTAAAGGTTTGGTTGAGATG 431
Query 1013 AAGAAGAGCGGTTCCAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGCTCTATG 1072
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 432 AAGAAGAGCGGTTCGAAGGAGATAACTTTTGAACAGAGAAGAGATCTGATCAGTTCTATG 491
Query 1073 GTGAAATGGGCTAGAGCTATCGGCCTATTCGTGAAGGCGGCCTCTGA-GCGTAAAGGAAA 1131
||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| |
Sbjct 492 GTGAAATGGGCTAGAGCTATCGGTCTATTCGTGAAGGCGGCCTCTGAAGA-TAAAGGACA 550
Query 1132 ATCTATTGATCTAGCACCTTTTGGAATTGATTATGAAAACAATGT 1176
|||||||||||| ||| ||||||| || || ||||| ||| ||||
Sbjct 551 ATCTATTGATCTGGCATCTTTTGGGATCGACTATGACAACCATGT 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5