BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61750.1
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496341 jgi|Araly1|496341|fgenesh2_kg.8__2157__AT5G61750.1 965 0.0
> Ahg496341 jgi|Araly1|496341|fgenesh2_kg.8__2157__AT5G61750.1
Length=633
Score = 965 bits (522), Expect = 0.0
Identities = 593/628 (94%), Gaps = 2/628 (0%)
Strand=Plus/Plus
Query 7 TTCTTCGTCGTGATCGTGTTTTGTGCAATCTTCTTATCTGTCTCTGGGGATTCGGACAAT 66
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 7 TTCTTCGTCGTGATCGTGTTTTGTGCAAACTTCTTATATGTCTCTGCGGATTCGGACAAT 66
Query 67 ATGCAGGACACATGTCCCACGGCTCCGGGAGAACAGAGCATCTTCTTCATCAACGGCTAT 126
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 67 ATGCAGGACACATGTCCGACTGCTCCGGGAGAACAGAGCATTTTCTTCATCAACGGCTAT 126
Query 127 CCTTGCAAGAACCCGACCAAGATTACCGCTCAGGATTTCAAGTCCACCAAACTTACAGAA 186
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 127 CCTTGCAAGAACCCGACCCAGATTAACGCTCAGGATTTCAAGTCCACCAAACTTACAGTA 186
Query 187 GCTGGAGATACAGACAATTATCTCCAGTCGAATGTCACATTGCTCACTGCATTAGAGTTT 246
|||||||| |||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 187 GCTGGAGACACAGACAATTATCTCCAGTCGAGCGTCACATTGCTCACTGCATCAGGGTTT 246
Query 247 CCAGGTCTCAACACTCTTGGCCTCTCGGTCTCACGGACTGATCTTGAAAGGGACGGATCT 306
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 247 CCAGGTCTCAACACTCTTGGCCTCTCCGTCTCAAGGACTGATCTTGAAAGGGACGGATCT 306
Query 307 GTGCCGTTCCATTCGCATCCGAGGTCATCTGAGATGCTCTTTGTGGTCAAAGGAGTCGTG 366
||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 307 GTGCCGTTCCATTCGCATCCGAGGTCATCCGAGCTTCTCTTTGTGGTCAAAGGAGTCGTG 366
Query 367 TTTGCTGGATTTGTGGATACTAACAACAAGATTTTTCAAACGGTTCTGCAAAAAGGCGAT 426
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 367 TTTGCTGGATTTGTGGATACTAACAACAAGATTTTTCAAACAGTTCTGCGAAAAGGCGAT 426
Query 427 GTTTTTGTCTTCCCTAAAGGATTGCTTCATTTCTGCTTGAGCGGTGGCTTT-GAACCAGC 485
|||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 427 GTTTTTGTCTTCCCCAAAGGATTGCTTCATTTCTGCTTGAGCGGTGG-TTTCGAACGAGC 485
Query 486 CACCGCTTTCTCGTTTTACAATAGCCAGAATCCTGGAGTCGTGAATATTGGAGAAGTTTT 545
||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 486 CACCGCTTTCTCGTTCTACAATAGCCAAAATCCTGGAGTCGTGAATATTGGAGGAGTTTT 545
Query 546 TGGGATCGATCAAGAGCATATAAAGATCATGACGAGGTGTTTAGCTACTGGCTCTGGCTG 605
|||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 546 TGGGATCGATCAAGAGCATATAAAGAACATGACGAGGTCTTTAGTTACTGGCTCTGGCTC 605
Query 606 TAGGGTCACTGACGGTGATGAGCTTTAG 633
||| ||||| |||||||||||||||||
Sbjct 606 TAGAGTCACCAACGGTGATGAGCTTTAG 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23178733536
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5