BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61770.2
Length=1253
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950940 jgi|Araly1|950940|scaffold_802827.1 1554 0.0
> Ahg950940 jgi|Araly1|950940|scaffold_802827.1
Length=955
Score = 1554 bits (841), Expect = 0.0
Identities = 903/933 (97%), Gaps = 3/933 (0%)
Strand=Plus/Plus
Query 74 GTTTGGTGAGATAAGAATAATAAATGGGTCGTTTCAAAAACAATAAGAAGAGTAGGGTCA 133
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTGGTGAGATAAG---CATAAATGGGTCGTTTCAAAAACAATAAGAAGAGTAGGGTCA 57
Query 134 TTGGGAAACCTATTGCGAAGAAAAATCAAGAGGATGTTAGTCATGTCACTGGGGATAAGA 193
||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TTGTGAAGCCTATTCCGAAGAAAAATCAAGAGGATGTTAGTCATGTCACTGGGGATAAGA 117
Query 194 TTCCCAAGAGTTTTGTCTTCTCAAGAATGAAACTTGCTGGCCCTGTTAAACAACTCCAGA 253
|||||||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 118 TTCCCAAGAGTTTTGTGTTTTCAAGAATGAAACTTCCTGGCCCTGTTAAACAACTTCAGA 177
Query 254 TGGATTTGAGGAAGCTCATGCTTCCCTACACTGCTCTCAGTCTTAAGGAGAAGAAGCGGA 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TGGATTTGAGGAAGCTCATGCTTCCCTACACTGCTCTCAGTCTTAAGGAGAAGAAGCGGA 237
Query 314 ACACTTTAAGGGACTTTTTGAATGTATCAGGTCCAATGGGTGTTACACATTTCCTTATGC 373
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 ACACTTTGAGGGACTTTTTGAATGTATCAGGTCCAATGGGTGTTACACATTTCCTTATGC 297
Query 374 TTTCGAAAACAGCGTCTTCACTGTCTCTTAGAGTAGCAAGAACCCCTCAGGGCCCGACTC 433
|||| ||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 298 TTTCAAAAACAGCGTCTTCACTGTCTCTAAGAGTAGCAAGAACTCCGCAGGGCCCGACTC 357
Query 434 TTACCTTCAAAATTCATCAGTATTCCTTAGCATCAGATATAGCTCAGTCTCAGCTTCGAC 493
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 358 TTACCTTTAAAATTCATCAGTATTCCCTAGCATCAGATATAGCTCAGTCTCAGCTTCGAC 417
Query 494 CTAGATGTCCTCAAGATCTTTTCAAGAGTCCTCCTTTGATTGTCCTTTCTGGATTCGGTT 553
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 418 CTAGATGTCCCCAAGATCTTTTCAAGAGTCCTCCTTTGATTGTTCTTTCTGGATTCGGTT 477
Query 554 CTCAAGAGTTGCATCTGAAACTGGCAACGATTATGTTTCAGAATATATTCCCAGCTATTG 613
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 478 CTCAGGAGTTGCATCTGAAACTAGCAACGATTATGTTTCAGAATATATTCCCAGCTATTG 537
Query 614 ATATTAACACTGTCAAGCTCTCCACCTGCCAGAGATTAGTACTCTTGAACTACAACAAAG 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATATTAACACTGTCAAGCTCTCCACCTGCCAGAGATTAGTACTCTTGAACTACAACAAAG 597
Query 674 ACACCAAGCTCATTGATTTCCGGCATTATTCTATAAGACTTCAGCCTGTTGGAGTATCTC 733
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATACAAAGCTCATTGATTTCCGGCATTATTCTATAAGACTTCAGCCTGTTGGAGTATCTC 657
Query 734 GTAGGATCAGAAAGTTTGTGCAAAATCATCAGGTTCCAGATCTTAGGAATCTGCAGGATG 793
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 658 GTAGGATCAGAAAGTTTGTGCAAAATCATCAGGTTCCCGATCTTAGGAATCTGCAGGATG 717
Query 794 TTAGTGATTTTGTCACCAAGGCTGGTTACGGATCAGAGAGCGAAGGAGATGAAGAAGCGG 853
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 718 TTAGTGATTTTGTCACCAAGGCTGGTTATGGATCAGAGAGCGAAGGAGATGAAGAAGCGG 777
Query 854 CAACAGTGACACTATCATCTGATCTAGGCCGAGTTAACAAAGGTGCCACCAAGAGCGCAG 913
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 778 CAACCGTGACACTATCATCTGATCTAGGCCGAGTTAACAAAGGTTCCACCAAGAGCGCCG 837
Query 914 TGAAACTGCAAGAAATTGGACCAAGAATGACTATGCAACTCGTTAAAGTGGAGGAAGGAT 973
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TGAAGCTGCAAGAAATTGGACCAAGAATGACTATGCAACTCGTTAAAGTGGAGGAAGGAT 897
Query 974 TGTGTACAGGAGGAATCATATTCAGtgaatatg 1006
|||||||||||||||||||||||||||||||||
Sbjct 898 TGTGTACAGGAGGAATCATATTCAGTGAATATG 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46814942076
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5