BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61780.1
Length=3552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950941 jgi|Araly1|950941|scaffold_802828.1 4870 0.0
Ahg940194 jgi|Araly1|940194|scaffold_600738.1 2854 0.0
> Ahg950941 jgi|Araly1|950941|scaffold_802828.1
Length=2992
Score = 4870 bits (2637), Expect = 0.0
Identities = 2885/3004 (96%), Gaps = 20/3004 (1%)
Strand=Plus/Plus
Query 247 GGTCTTAGCCAATCACCAACATGGCGACTGGGGCAGCAACTGAGAACCAGTGGCTCAAAG 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTCTTAGCCAATCACCAACATGGCGACTGGGGCAGCAACTGAGAACCAGTGGCTCAAAG 60
Query 307 GGAGAGTGAAGGCTGTTACCTCCGGAGACTGCTTGGTGATCACGGCTTTGACCCACAACA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGAGAGTGAAGGCTGTTACCTCCGGAGACTGCTTGGTGATCACGGCTTTGACCCACAACA 120
Query 367 GAGCTGGCCCACCTCCGGAAAAGACCATCACTCTTTCTTCTCTTATGGCTCCTAAGATGG 426
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 GAGCTGGCCCACCTCCTGAAAAGACCATCACTCTTTCTTCTCTTATGGCTCCTAAAATGG 180
Query 427 CTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAGGGAGTTTCTAAGGAAGC 486
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 181 CTCGCAGGGGAGGTATAGATGAGCCTTTTGCATGGGAAAGCAGGGAGTTTCTGAGGAAGC 240
Query 487 TTTGCATTGGAAAGGAGGTTGCTTTCAAAGTGGATTACAAAGTGGAAGCAATTGCCGGAA 546
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 TTTGCATTGGAAAGGAGGTTGCTTTCAAAGTGGATTACAAAGTGGAAGCTATTGCCGGAA 300
Query 547 GAGAATTTGGCTCTGTTTACCTTGGTAACGAAAATCTTGCGAAGCTTGTTGTTCAAAATG 606
||||||||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||
Sbjct 301 GAGAATTTGGCTCGGTTTATCTTGGTCACGAAAATCTTGCTAAGCTTGTTGTTCAAAATG 360
Query 607 GCTGGGCAAAGGTCAGACGGCCAGGTCAGCAGAATCAGGATAAGGTTAGTCCTTACATTG 666
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTGGGCAAAGGTCAGAGGGCCAGGTCAGCAGAATCAGGATAAGGTTAGTCCTTACATTG 420
Query 667 CGGAGCTGGAACAGCTTGAAGAGCAGGCTCAGCAGGAAGGATTTGGTCGTTGGAGCAAGG 726
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CGGAGCTGGTACAGCTTGAAGAGCAGGCTCAGCAGGAAGGATTTGGTCGTTGGAGCAAGG 480
Query 727 TTCCTGGTGCTGCTGAGGCATCTATCAGAAATCTTCCTCCTTCTGCCGTTGGAGATTCTG 786
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 TTCCTGGTGCTGCTGAGGCATCTATCAGAAATCTTCCTCCTTCTGCTGTTGGAGATTCTG 540
Query 787 GCAATTTTGATGCCATGGGTCTTTTAGCCGCAAGTAAAGGCAAACCCATGGAAGGTATTG 846
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAATTTTGATGCTATGGGTCTTTTAGCCGCAAGTAAAGGCAAACCCATGGAAGGTATTG 600
Query 847 TTGAGCAAGTCCGTGATGGCAGCACCATTCGGGTTTATCTTCTTCCGGAATTTCAGTTTG 906
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 601 TTGAGCAAGTCCGTGATGGCAGTACCCTTCGGGTTTATCTTCTTCCGGAATTTCAGTTTG 660
Query 907 TTCAAGTATTTGTTGCTGGACTCCAGGCTCCATCGATGGGAAGGAGACAATCAACACAAG 966
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 TGCAAGTATTTGTTGCTGGACTCCAGGCTCCATCGATGGGAAGGAGACAATCTACACAAG 720
Query 967 AAGCTGTCGTTGATCCTGATGTTACAGCAACTTCGAATGGAGATGCTTCTGCTGAGACGC 1026
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAGCTGTTGTTGAGCCGGATGTTACAGCAACTTCGAATGGAGATGCTTCTGCTGAGACGC 780
Query 1027 GTGGCCCTCTAACAACAGCTCAGAGACTTGCTGCCTCAGCAGCATCGTCTGTTGAGGTTT 1086
|||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 781 GTGGTCCTCTAACATCAGCTCAGAGACTCGCTGCCTCAGCAGCATCGTCTGTTGAGGTTT 840
Query 1087 CCTCTGATCCGTTTGCAATGGAAGCCAAGTACTTTACTGAGCTTCGTGTGCTTAATAGAG 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCTCTGATCCGTTTGCAATGGAAGCCAAGTACTTTACTGAGCTTCGTGTGCTTAATAGAG 900
Query 1147 ATGTTCGTATTGTTCTTGAAGGCGTTGACAAGTTCAACAATCTGATTGGGTCAGTATACT 1206
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 901 ATGTTCGTATTGTTCTTGAAGGCGTTGACAAATTCAACAATCTGATTGGGTCAGTATACT 960
Query 1207 ATTCCGATGGGGATACAGTTAAAGACTTGGGTTTGGAGCTGGTTGAAAATGGTCTTGCTA 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATTCCGATGGGGATACAGTTAAAGACTTGGGTTTGGAGCTGGTTGAAAATGGTCTTGCTA 1020
Query 1267 AGTACGTTGAGTGGAGTGCCAACATGTTGGATGAAGAAGCCAAAAAGAAATTGAAAGCTA 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGTACGTTGAGTGGAGTGCCAACATGTTGGATGAAGAAGCCAAAAAGAAATTGAAAGCTA 1080
Query 1327 CAGAACTTCAATGCAAGAAAAACCGGGTGAAAATGTGGGCAAACTACGTCCCTCCAGCTA 1386
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1081 CAGAACTCCAATGCAAGAAAAACCGGGTGAAAATGTGGGCAAACTATGTCCCTCCAGCTA 1140
Query 1387 GCAACTCCAAGGCAATTCATGACCAGAATTTTACCGGAAAGGTAGTGGAAGTTGTGAGCG 1446
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1141 GCAACTCTAAGGCAATTCATGACCAGAACTTTACCGGAAAGGTAGTGGAAGTTGTGAGCG 1200
Query 1447 GGGACTGCTTAGTAGTTGCTGATGATTCTATCCCATTCGGGAGCCCAATGGCGGAGCGCA 1506
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1201 GGGACTGCTTAGTAGTTGCTGATGATTCTATCCCATTCGGAAGCCCAATGGCAGAGCGCA 1260
Query 1507 GAGTTTGTCTTTCCAGTATCAGGTCTCCTAAAATGGGTAACCCACGCAGAGAGGAGAAAC 1566
||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1261 GAGTTTGCCTTTCCAGTATTAGGGCTCCTAAAATGGGTAACCCACGCAGAGAGGAGAAAC 1320
Query 1567 CTGCCCCTTATGCGCGCGAAGCCAAGGAGT-TTCTGAGACAAAAGCTTATCGGAATGGAG 1625
|||||||||||||| | ||||||||||| | ||||||||| |||||||||||||| ||||
Sbjct 1321 CTGCCCCTTATGCGTGGGAAGCCAAGGA-TCTTCTGAGACTAAAGCTTATCGGAAAGGAG 1379
Query 1626 GTTATTGTTCAAATGGAATACTCAAGGAAGATTAGCCCAGGAGATGGTGTTACTACTTCT 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GTTATTGTTCAAATGGAATACTCAAGGAAGATTAGCCCAGGAGATGGTGTTACTACTTCT 1439
Query 1686 GGAGCTGGTGATAGGGTCATGGATTTCGGCTCAGTGTTCCTTCCATCTC-CTACCAAGGG 1744
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct 1440 GGAGCTGGTGATAGGGTCATGGATTTTGGCTCAGTGTTCCTTCCATC-CACTACCAAGGG 1498
Query 1745 TGATACAGCTGTAGCAGCTGCAGCAACTCCTGGAGCGAATATTGCTGAACTCATTATTTC 1804
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1499 TGATGCAGATGTAGCAGCTGCAGCAACTCCTGGAGCGAATATTGCTGAACTCATTATTGC 1558
Query 1805 CCGTGGCT-TAGGGACTGTGGTTCGACATCGTGACTTTGAAGAGAGGTCGAACCATTATG 1863
|||||||| | |||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1559 CCGTGGCTAT-GGGACTGTGGTTAGACATCGTGACTTTGAAGAGAGATCGAACCATTATG 1617
Query 1864 ACGCTCTCCTGGCTGCTGAAGCTCGTGCTATTGCTGGGAAGAAGA-ATATCCATTCTGCA 1922
||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 1618 ACGCTCTCCTGGCTGCTGAAGCTCGTGCTGTTGCTGGGAAGAAGGGA-ATCCATTCTGCA 1676
Query 1923 AAGGATTCTCCAGCCCTACACATTGCAGACCTGACTGTGGCCTCGGCCAAGAAGGCTAAA 1982
||||||||||||||| | |||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1677 AAGGATTCTCCAGCCATGCACATTACAGACCTGACTGTGGCCTCGGCGAAGAAGGCTAAA 1736
Query 1983 GATTTCCTGCCATCCCTGCAG-AGAATCAACCAGA-TATCTGCCGTTGTGGAATATGTGC 2040
|||||||||||||||||| || ||| ||| ||| |||||||||||||||||||||| |
Sbjct 1737 GATTTCCTGCCATCCCTG-AGCAGAGGCAAG-AGAATATCTGCCGTTGTGGAATATGTCC 1794
Query 2041 TAAGTGGACATCGGTTCAAGCTATACATTCCAAAAGAATCGTGCAGCATTGCCTTTGCAT 2100
| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1795 TGAGTGGACATCGGTTCAAGCTATACATTCCAAAGGAAACGTGCAGCATTGCCTTTGCAT 1854
Query 2101 TCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCCTATTCGGAAGAAGCTATTGCTTTAA 2160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 TCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCCTATTCGGAAGAAGCTATTGCTTTAA 1914
Query 2161 TGAGACGTAAGATCATGCAGAGAGATGTCGAGATTGTAGTTGAAAATGTGGATAGAACCG 2220
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1915 TGAGACGTAAAATCATGCAGAGAGATGTCGAGATTGTAGTTGAAACTGTGGATAGAACCG 1974
Query 2221 GTACTTTCTTGGGATCAATGTGGGAGAAAAACTCAAAGACGAACGCAGGAACATATCTTC 2280
|||||||||||||||||||||||||| |||||||| ||||||||||| |||||||
Sbjct 1975 GTACTTTCTTGGGATCAATGTGGGAG------TCAAAGACCAACGCAGGAACGTATCTTC 2028
Query 2281 TTGAAGCTGGCCTGGCAAAAATGCAGACTGGCTTTGGTGCAGACAGGATTCCCGAAGCTC 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 TTGAAGCTGGCCTGGCAAAAATGCAGACTGGCTTTGGTGCAGACAGGATTCCCGAAGCTC 2088
Query 2341 ATATTCTTGAAATGGCAGAACGATCTGCTAAAAATCAGAAACTGAAGATTTGGGAAAACT 2400
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2089 ATATTCTTGAATTGGCAGAGCGATCTGCTAAAAATCAGAAACTGAAGATTTGGGAAAACT 2148
Query 2401 ATGTTGAAGGAGAGGAAGTAGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAA 2460
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2149 ATGTTGAAGGAGAGGAAGTCGTAAACGGTAGTTCTAAAGTAGAAACCAGGCAGAAGGAAA 2208
Query 2461 CACTAAAGGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTTCTATGTTCAGACGGTTG 2520
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2209 CATTAAAGGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGATTCTATGTTCAGACGGTTG 2268
Query 2521 GCGATCAAAAAGTAGCTTCGATTCAAAACCAGCTTGCAGCTCTGAGTCTTAAAGACGCTC 2580
| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 2269 GTGATCAAAAAGTAGCTTCGATTCAAAACCAGCTTGCATCTCTGAGTCTTAAAGATGCTC 2328
Query 2581 CCATTATTGGATCGTTTAATCCTAAGAAGGGTGACATCGTCCTTGCACAATTTAGCCTCG 2640
||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 2329 CCATTATTGGATCATTTAATCCTAAGAGGGGTGACATCGTCCTTGCACAGTTTAGCCTTG 2388
Query 2641 ATAACTCCTGGAACCGCGCAATGATTGTTAATGGACCTCGAGGAGCAGTTCAATCTCCAG 2700
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2389 ATAACTCCTGGAACCGTGCAATGATTGTTGATGGACCTCGAGGAGCAGTTCAATCTCCAG 2448
Query 2701 AGGAGGAATTTGAAGTGTTCTACATCGATTATGGAAACCAAGAAATAGTTCCGTACAGCG 2760
| ||| |||| |||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2449 AAGAGAAATTCGAAGTGTTCTACATCGATTATGGAAACCAAGAAACGGTTCCATACAGCG 2508
Query 2761 CAATACGCCCTGTGGACCCTTCAGTATCCTCAGCACCAGGGCTAGCACAGCTCTGCAGAC 2820
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2509 CAATTCGCCCTGTGGACCCTTCAGTATCCTCAGCACCAGGGCTCGCACAGCTCTGCAGAC 2568
Query 2821 TTGCCTACATAAAAGTTCCAGGCAAGGAAGAGGACTTTGGTCGTGACGCCGGAGAGTATT 2880
||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct 2569 TTGCCTACATAAAAGTTCCAGGCCTGGAAGAGGACTTTGGTCCTGATGCCGGAGAGTATT 2628
Query 2881 TGCATACCGTAACACTCGAAAGTGGTAAAGAGTTCAGGGCAGTGGTAGAGGAAAGAGATA 2940
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 2629 TGCATACCGTAACACTCGGAAGTGGTAAAGAGTTCAAGGCAGTGGTAGAGGAAAGAGATA 2688
Query 2941 CTTCAGGAGGCAAAGTGAAGGGCCAAGGAACTGGAACTGAGCTCGTTGTAACTCTCATCG 3000
||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 2689 CTTCAGGAGGCAAAGTGAAGGGCCAAGGAACTGGAACCGAGCTTGCTGTAACTCTCATCG 2748
Query 3001 CTGTCGATGATGAGATCTCTGTCAATGCAGCAATGCTTCAGGAAGGAATAGCCAGGATGG 3060
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2749 CTGTCGATGATGAGATCTCTGTCAATGCAGCAATGCTTCAGGAAGGAATAGCGAGGATGG 2808
Query 3061 AGAAACGCAGGAGATGGGAACCGAAAGACAAGCAAGCCGCTCTTGATGCTCTTGAGAAGT 3120
|||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2809 AGAAACGCAGGAAATGGGAACCGAAAGACAAGCAAGCTGCTCTTGATGCACTTGAGAAGT 2868
Query 3121 TCCAAGACGAAGCTCGCAAATCTAGGACCGGAATCTGGGAGTACGGAGATATCCAATCTG 3180
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 2869 TCCAAGACGAAGCTCGCAAATCTAGGACCGGAATCTGGCAGTACGGAGACATCCAATCTG 2928
Query 3181 ATGATGAGGACAATGTTCCAGTCAGGAAACCGGGTCGCGGGTAAGT-TT-CACACCGGTG 3238
|||||||||||| ||||||||||||||||||||||||||||||||| || |||| |||||
Sbjct 2929 ATGATGAGGACACTGTTCCAGTCAGGAAACCGGGTCGCGGGTAAGTGTTTCACAGCGGTG 2988
Query 3239 AAAA 3242
||||
Sbjct 2989 AAAA 2992
> Ahg940194 jgi|Araly1|940194|scaffold_600738.1
Length=3015
Score = 2854 bits (1545), Expect = 0.0
Identities = 2534/2997 (85%), Gaps = 125/2997 (4%)
Strand=Plus/Plus
Query 285 ACTGAGAACCAGTGGCTCAAAGGGAGAGTGAAGGCTGTTACCTCCGGAGACTGCTTGGTG 344
||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 34 ACTGAGAACCAATGGCTTAAAGGAAGAGTGAAGGCTGTTACCTCCGGAGACTGCTTAGTG 93
Query 345 ATCACGGCTTTGACCCACAACAGAGCTGGCCCACCTCCGGAAAAGACCATCACTCTT-TC 403
||||||||||||| ||||||||||||||| || || |||||||||||||| ||| || ||
Sbjct 94 ATCACGGCTTTGAGCCACAACAGAGCTGGACCTCCACCGGAAAAGACCATTACT-TTATC 152
Query 404 TTCTCTTATGGCTCCTAAGATGGCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGA 463
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 TTCTCTTATGGCACCTAAGATGGCTCGCAGAGGAGGTATAGATGAGCCTTTTGCATGGGA 212
Query 464 AAGCAGGGAGTTTCTAAGGAAGCTTTGCATTGGAAAGGAGGTTGCTTTCAAAGTGGATTA 523
||||| ||| ||| | ||||| |||||||| |||||||||||||| |||||||| |||||
Sbjct 213 AAGCAAGGAATTTTTGAGGAAACTTTGCATAGGAAAGGAGGTTGCATTCAAAGTTGATTA 272
Query 524 CAAAGTGGAAGCAATTGCCGGAAGAGAATTTGGCTCTGT-TTACCTTGGTAACGAAAATC 582
|||||||||||| ||||| |||||||||||||||||||| || |||||| || || ||||
Sbjct 273 CAAAGTGGAAGCTATTGCTGGAAGAGAATTTGGCTCTGTATT-CCTTGGCAATGAGAATC 331
Query 583 TTGCGAAGCTTGTTGTTCAAAATGGCTGGGCAAAGGTCAGACG-GCCAGGTCAGCAGAAT 641
|||| |||||||||||| ||||||| ||||||||||| || | ||||||||||||||||
Sbjct 332 TTGCTAAGCTTGTTGTTAAAAATGGTTGGGCAAAGGTTAG-GGAGCCAGGTCAGCAGAAT 390
Query 642 CAGGATAAGGTTAGTCCTTACATTGCGGAGCTGGAACAGCTTGAAGAGCAGGCTC-AGCA 700
|||||||||||||||||||||||| ||| || |||||| ||||||||||| | ||||
Sbjct 391 CAGGATAAGGTTAGTCCTTACATTAAAGAGTTGCTACAGCTCGAAGAGCAGGC-CAAGCA 449
Query 701 GGAAGGATTTGGTCGTTGGAGCAAGGTTCCTGGTGCTGCTGAGGCATCTATCAGAAATCT 760
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 450 GGAAGGATATGGTCGTTGGAGCAAAGTTCCTGGTGCTGCTGAGGCATCTATCAGAAACCT 509
Query 761 TCCTCCTTCTGCCGTTGGAGATTCTGGC-AATTTTGATGCCATGGGTCTTTTAGCCGCAA 819
||||||||||||| |||| |||||| || |||||||||||||| |||||||| ||||
Sbjct 510 TCCTCCTTCTGCCATTGGGGATTCT-GCTGGCTTTGATGCCATGGGCCTTTTAGCTGCAA 568
Query 820 GTAAAGGCAAACCCATGGAAGGTATTGTTGAGCAAGTCCGTGATGGCAGCACCATTCGGG 879
|| ||||| || |||||||||||||| |||||||| |||||||| || || |||||||
Sbjct 569 ACAAGGGCAAGCCTATGGAAGGTATTGTGGAGCAAGTGCGTGATGGAAGTACTATTCGGG 628
Query 880 TTTATCTTCTTCCGGAATTTCAGTTTGTTCAAGTATTTGTTGCTGGACTCCAGGCTCCAT 939
||||||||||||| || || |||||||| |||||||||||||| ||| | ||||||||||
Sbjct 629 TTTATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTTCAGGCTCCAT 688
Query 940 CGATGGGAAGGAGACAATCAACACAA--GAAGCTGTCGTTGATCCTGATGTTACAGCA-- 995
| ||||||||| | || | ||| || |||| ||| ||||| | | ||| ||| |
Sbjct 689 CTATGGGAAGGCG--AA-CCACA-AATGGAAG-TGTTGTTGAGAC--A-GTTCCAG-ATG 739
Query 996 ACTTCGAATGGAGATGCTTCTGCTGAGACGCGTGGCCCTCTAACAACAGCTCAGAGACTT 1055
| |||||||||||| |||||||||| | || || |||||||| ||||||||||||||
Sbjct 740 A-GCCGAATGGAGATGTTTCTGCTGAGTCACGAGGTCCTCTAACGTCAGCTCAGAGACTT 798
Query 1056 GCTGCCTCAGCAGCATCGTCTGTTGAGGTTTCCTCTGATCCGTTTGCAA-TGGAAGCCAA 1114
|||||||| ||||||||||| |||||||||||||||||| ||||||| | ||||||||
Sbjct 799 GCTGCCTCTGCAGCATCGTC---TGAGGTTTCCTCTGATCCATTTGCAACT-GAAGCCAA 854
Query 1115 GTACTTTACTGAGCTTCGTGTGCTTAATAGAGATGTTCGTATTGTTCTTGAAGGCGTTGA 1174
||||||||| |||| ||||| |||| |||||||||||| ||| ||||||||||||||||
Sbjct 855 GTACTTTACCGAGCACCGTGTTCTTAGTAGAGATGTTCGCATTATTCTTGAAGGCGTTGA 914
Query 1175 CAAGTTCAACAATCTGATTGGGTCAGTAT-ACTATTCCGATGGGGATACAGTTAAAGACT 1233
||| ||||||||||||||||| ||||| | | ||||| |||||||| |||||||||||||
Sbjct 915 CAAATTCAACAATCTGATTGGTTCAGT-TCATTATTCTGATGGGGAAACAGTTAAAGACT 973
Query 1234 TGGGTTTGGAGCTGGTTGAAAATGGTCTTGCTAAGTACGTTGAGTGGAGTGCCAACATGT 1293
||||||||||||| ||||||||||||||||| || | ||||| |||||||| ||||||
Sbjct 974 TGGGTTTGGAGCTCGTTGAAAATGGTCTTGCGAAATTTGTTGAATGGAGTGCTAACATGA 1033
Query 1294 TGGATGAAGAAGCCAAAAAGAAA-TTGAAAGCTACAGAACTTCAATGCAAGAAAAACCGG 1352
|||| || |||| | || ||||| ||||||||| |||||||||||||||||||| | |
Sbjct 1034 TGGAGGATGAAG-CTAAGAGAAAGTTGAAAGCTGCAGAACTTCAATGCAAGAAAGATAAG 1092
Query 1353 GTGAAAATGTGGGCAAACTACGTCCCTCCAGCTAGC-AACTCCAAGGCAATTCATGACCA 1411
|| |||||||||| ||||||||| |||||||||| | ||||| |||||||||||||||||
Sbjct 1093 GTTAAAATGTGGGGAAACTACGTTCCTCCAGCTA-CAAACTCGAAGGCAATTCATGACCA 1151
Query 1412 GAATTTTACCGGAAAGGTAGTGGAAGTTGTGAGCGGGGACTG-CTTAGTAGTTGCTGATG 1470
||| ||||| ||||||||||||||||| ||||| ||||| || |||| ||||||| ||||
Sbjct 1152 GAACTTTACGGGAAAGGTAGTGGAAGTGGTGAGTGGGGATTGTCTTA-TAGTTGCCGATG 1210
Query 1471 ATTCTATCCCATTCGGGAGCCCAATGGCGGAGCGCA-GAGTTTGTCTTTCCAGTATCAGG 1529
|| |||| ||||| ||||| ||| ||| ||| | | | || |||||||| ||||||||
Sbjct 1211 ATGCTATTCCATTTGGGAGTCCAGCGGCAGAGAG-ACGGGTCTGTCTTTCGAGTATCAGA 1269
Query 1530 TCTCCTAAAATGGGTAACCCACGCAGAGAGGAGAAACCTGCCCCTTATGCGCGCGAAGCC 1589
||||| || ||||| ||||||||| |||| |||||||| || |||||||| || |||| |
Sbjct 1270 TCTCCCAAGATGGGCAACCCACGCCGAGAAGAGAAACCAGCTCCTTATGCTCGGGAAG-C 1328
Query 1590 AAG-GAGTTTCTGAGACAAAAGCTTATCGG-AATGGAGGTTATTGTTCAAATGGAATACT 1647
||| || |||||||||||| |||||| || || ||||||||||||||||||||||||
Sbjct 1329 AAGAGAATTTCTGAGACAACGGCTTATTGGCAA-ACAGGTTATTGTTCAAATGGAATACT 1387
Query 1648 CAAGG-AAGATTAGCCC-AGGAGATGGTGTTACTACTTCTGGAGCTGGTGATAGGGTCAT 1705
||||| ||| | | ||| |||||||||| ||| || |||||||||| | ||||| ||||
Sbjct 1388 CAAGGAAAG-TCA-CCCAAGGAGATGGTCCTACCACATCTGGAGCTGCTAATAGGTTCAT 1445
Query 1706 GGATTTCGGCTCAGTGTTCCTTCCATCTCCTACC-AAGG-G----TGAT--A-CAGCTG- 1755
|||||| |||||||||||||||||||||||| || |||| | |||| | ||||
Sbjct 1446 GGATTTTGGCTCAGTGTTCCTTCCATCTCCTGCCAAAGGCGATTCTGATGAAGTGGCTGC 1505
Query 1756 -T-AGCAGCTGCAGC-----A----A--C-TCC---TGGAGCGAATATTGCTGAACTCAT 1798
| | | |||||||| | | | ||| ||| | |||||||||||| ||| |
Sbjct 1506 ATCATCTGCTGCAGCAATTAATGGCAGTCATCCGGTTGGTGTGAATATTGCTGAGCTCGT 1565
Query 1799 TATTTCCCGTGGCTTAGGGACTGTGGTTCGACATCGTGACTTTGAAGAGAGGTCGAACCA 1858
| || ||||||| || || | ||||||| ||||| | || ||||||||| | || |||||
Sbjct 1566 TCTTGCCCGTGGTTTTGGAAATGTGGTTAGACATAGAGATTTTGAAGAGCGATCAAACCA 1625
Query 1859 TTATGACGCTCTCCTGGCTGCTGAAGCTCGTGCTATTG-CTGGGAAG-AAGAATATCCAT 1916
|||||| ||||| |||||||||||||||||| || || |||| ||| ||| | ||||||
Sbjct 1626 TTATGATGCTCTTCTGGCTGCTGAAGCTCGTTCT-CTGTCTGGAAAGAAAGGA-ATCCAT 1683
Query 1917 TCTGCAAAGGATTCTCCAGCCCTACACATTGCAGACCTGACTGTGGCCTCGGCCAAGAAG 1976
|||||||| || ||||||||| | ||||| ||||||| |||||||| | || |||||
Sbjct 1684 TCTGCAAAAGAATCTCCAGCCATGCACATCACAGACCTAACTGTGGCGGCAGCTAAGAAA 1743
Query 1977 GCTAAAGATTTCCTGCCATCCCTGCAGAGAATCAACCAG-ATATCTGCCGTTGTGGAATA 2035
||||||||||||||||||||| |||| |||||| | || ||| | || |||||||||||
Sbjct 1744 GCTAAAGATTTCCTGCCATCCTTGCAAAGAATC-AGGAGAATACCCGCTGTTGTGGAATA 1802
Query 2036 TGTGCTAAGTGGACATCGGTTCAAGCTATACATTCCAAAAGA-ATCGTGCAGCATTGCCT 2094
||| || || ||||||||||| ||||| || | ||| ||||| | | |||||||||||||
Sbjct 1803 TGTCCTCAGCGGACATCGGTTTAAGCTTTATA-TCCCAAAGATAACATGCAGCATTGCCT 1861
Query 2095 TTGCATTCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCCTATTCGGAAGAAGCTAT-T 2153
|| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |
Sbjct 1862 TTTCATTCTCTGGTGTCAGATGTCCTGGCCGTGGCGAACCTTATTCAGAAGAGGCTATCT 1921
Query 2154 GCTTTAATGAGACGTAAGATCATGCAGAGAGATGTCGAGATTGTAGTTGAAAATGTGGAT 2213
|| |||||||||| | |||||||||||||||||| ||||||| |||||||| ||||||
Sbjct 1922 -CTGTAATGAGACGGAGGATCATGCAGAGAGATGTTGAGATTGAAGTTGAAACCGTGGAT 1980
Query 2214 AGAACCGGTACTTTCTTGGGATCAATGTGGGAGAAAAACTCAAAGACGAACGCAGG-AAC 2272
||||||||||||||||||||||| ||||||||| || | |||||| | || |||
Sbjct 1981 AGAACCGGTACTTTCTTGGGATCCATGTGGGAG------TCGAGGACGAATG-TGGCAAC 2033
Query 2273 A-TATCTTCTTGAAGCTGGCCTGGCAAAAATGCAGACTGGCTTTGGTGCAGACAGGATTC 2331
| | ||| |||||||||||| | ||||||||||||||| |||||||||||||||||| ||
Sbjct 2034 AGT-TCTGCTTGAAGCTGGCTTAGCAAAAATGCAGACTAGCTTTGGTGCAGACAGGA-TC 2091
Query 2332 -CCGAAGCTCATATTCTTGAA-ATGGCAGA-ACGATCTGCTAAAAATCAGAAACTGAAGA 2388
||||||| ||| |||||||| | ||| || | ||||||||||||| |||||||||||||
Sbjct 2092 GCCGAAGCACATCTTCTTGAACA-GGCCGAGA-GATCTGCTAAAAACCAGAAACTGAAGA 2149
Query 2389 TTTGGGAAAACTATGTTGAAGGAGAGGAAGTAGT-AAACGGTAGTTCTAA-A--GTAGAA 2444
||||||||||||||||||||||||| ||||| | |||||| | | | || | ||||||
Sbjct 2150 TTTGGGAAAACTATGTTGAAGGAGAAGAAGTC-TCAAACGGAAATACAAATACCGTAGAA 2208
Query 2445 ACCAGGCAGAAGGAAACACT-AAAGGTTGTTGTTACGGAAGTACTTGGAGGCGGTCGTTT 2503
|||||||| ||||| | || ||||||||||||||| |||||||||||||| ||||| ||
Sbjct 2209 ACCAGGCAAAAGGAGAT-CTTAAAGGTTGTTGTTACAGAAGTACTTGGAGGTGGTCGGTT 2267
Query 2504 CTATGTTCAGA-CGGTTGGCGATCAAAAAGTAGCTTCGATTCAAAACCAGCTTGCAGCTC 2562
||||||||| | | | ||| ||||| ||||||||||||||||| |||||||||||| | |
Sbjct 2268 CTATGTTCA-ATCTGCTGGAGATCAGAAAGTAGCTTCGATTCAGAACCAGCTTGCATC-C 2325
Query 2563 T-GAGTCTTAAAGACGCTCCCATTATTGGATCGTTTAATCCTAAGA-AGGGTGACATCGT 2620
| |||| ||||||||||||||||||| || || |||||||| |||| ||| |||||||||
Sbjct 2326 TTGAGTATTAAAGACGCTCCCATTATCGGGTCCTTTAATCCAAAGAGAGG-TGACATCGT 2384
Query 2621 CCTTGCACAATTTAGCCTCGATAACTCCTGGAACCGCGCAATGATTGTTAATGGACCTCG 2680
||||||||| |||||||| ||||||||||||||||| ||||||||||| | || ||| ||
Sbjct 2385 CCTTGCACAGTTTAGCCTTGATAACTCCTGGAACCGTGCAATGATTGTGACTGCACCCCG 2444
Query 2681 AGGAGCAGTTCAATCTCCAGAGGAGGAATTTGAAGTGTTCTACATCGATTATGGAAACCA 2740
|| ||| |||||||| ||||| || |||| |||||||||||||||||||||||||||||
Sbjct 2445 AGCAGCGGTTCAATCCCCAGATGAAAAATTCGAAGTGTTCTACATCGATTATGGAAACCA 2504
Query 2741 AGAAATAGTTCCGTACAGCGCAAT-ACGCCCTGTGGACCCTTCAGTATCCT-CAGCACCA 2798
|| | |||||| ||||||||||| | | || | |||||||| ||||| | ||||||||
Sbjct 2505 GGAGACAGTTCCATACAGCGCAATCA-GACCAATAGACCCTTCGGTATC-TGCAGCACCA 2562
Query 2799 GGGCTAGCACAGCTCTGCAGACTTGCCTACATAAAAGTTCCAGGCAAGGAAGAGGACTTT 2858
||||| || |||||||||||||||||||||||||| |||||| || |||||| ||||||
Sbjct 2563 GGGCTCGCTCAGCTCTGCAGACTTGCCTACATAAAGGTTCCAAGCTTGGAAGAAGACTTT 2622
Query 2859 GGT-CGTGACGCCGGAGAGTATTTGCATACCGTAACACTCGAAAGTGGTAAAGAGTTCAG 2917
||| | ||| |||||||||||||||||||| ||||| || | ||||||||||||||||
Sbjct 2623 GGTGC-TGAAGCCGGAGAGTATTTGCATACGGTAACGCTGGGTAGTGGTAAAGAGTTCAA 2681
Query 2918 GGCAGTGGTAGAGGAAAGAGATACTTCAGGAGGCAAAGTGAA-GGGCCAAGGAACTGGAA 2976
|||||| |||| |||||||| || || ||||||||||| || |||| ||||||||||||
Sbjct 2682 AGCAGTGATAGAAGAAAGAGACACATCTGGAGGCAAAGTCAAAGGGC-AAGGAACTGGAA 2740
Query 2977 CTGAGCTCGTTGTAACTCTCATCGCTGTCGATGATGAGATCTCTGTCAATGCAGCAATGC 3036
|||| ||| ||| || ||||| ||||||||||||||||||||||| || || |||||||
Sbjct 2741 CTGAATTCGCTGTCACACTCATTGCTGTCGATGATGAGATCTCTGTAAACGCTGCAATGC 2800
Query 3037 TTCAGGAAGGAATAGCCAGGATGGAGAAACGCAGGAGATGGGAAC-CGAAAGACAAGCAA 3095
|||||||||||||||| || ||||||||||| | || ||||| | | |||||||| |||
Sbjct 2801 TTCAGGAAGGAATAGCGAGAATGGAGAAACGTAAGAAATGGGGGCAC-AAAGACAAACAA 2859
Query 3096 GCCGCTCTTGATGCTCTT-GAGAAGTTCCAAGACGAAGCTCGCAAATCTAGGACCGGAAT 3154
|| |||||||||||| || |||||||||||||| ||||||||||| || || | |||||
Sbjct 2860 GCTGCTCTTGATGCT-TTAGAGAAGTTCCAAGAGGAAGCTCGCAAGTCGAGAATTGGAAT 2918
Query 3155 CTGGGAGTACGGAGATATCCAATCTGATGATGAGGACAATGTTCCAGTCAGGAAACC 3211
|||| ||||||| || || | || ||||||||||||| || ||| | ||| |||||
Sbjct 2919 CTGGCAGTACGGTGACATTGAGTCCGATGATGAGGACACTGGTCCGGCCAGAAAACC 2975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134152944825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5