BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61810.1
Length=1828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950944 jgi|Araly1|950944|scaffold_802831.1 2342 0.0
Ahg358384 jgi|Araly1|358384|fgenesh1_pg.C_scaffold_8002171 2021 0.0
Ahg487557 jgi|Araly1|487557|fgenesh2_kg.6__691__AT5G07320.1 1306 0.0
> Ahg950944 jgi|Araly1|950944|scaffold_802831.1
Length=1480
Score = 2342 bits (1268), Expect = 0.0
Identities = 1400/1465 (96%), Gaps = 4/1465 (0%)
Strand=Plus/Plus
Query 147 TCGATTGATCGTTAACCAGCAATGGAGGCAGAGAAATCCAAGCAAAATCCGGGTAAGAAG 206
||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1 TCGATTGATCGTTAATTAGCAATGGAGGCAGAGAAATCCAAGAAAAATCCGGTTAAGAAG 60
Query 207 CCCGTAGAAGCAACAATGGAGCACGTGTTGGTGGCATTACGAGAGACCAAGGAGAAGAGA 266
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 61 CCCGTAGAGGCAACAATGGAGCATGTGTTGGTGGCATTACGAGAGACCAAGGAGGAGAGG 120
Query 267 GAGATCAGGATTCAAAAACTGTTCGAATTCTTCGACAATTCGAAGTTAGGGTTCTTAGAC 326
|||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGACCAGAATTCGAAAACTGTTCGAATTCTTCGACAATTCGAAGTTAGGGTTCTTAGAC 180
Query 327 GATACCCAGATCGAGAAAGGTTTGTCTTCGCTTAGTATTCCTCCAAAGTATAGGTACGCT 386
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 181 GATACCCAGATCGAGAAAGGTTTGTCTTCGCTTAGTATTCCTCAAAATTATAGGTACGCT 240
Query 387 AGTGATTTTCTTAAAGTCTGCGACTCGAATCGAGATGGGCGTGTGGACTACCAGGAGTTT 446
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 241 AGTGATTTTCTTAAAGTCTGCGACGCGAATCGAGATGGGCGTGTGGATTACCAGGAGTTT 300
Query 447 CGTCGTTACATGGA-TGCTAAAGAGCTTGAGTTGTACAAGATTTTTCAGGCCATTGATAT 505
|||||||||||||| | |||| ||||||||| | |||||||| || |||||||||||| |
Sbjct 301 CGTCGTTACATGGACT-CTAAGGAGCTTGAGCTCTACAAGATCTTCCAGGCCATTGATGT 359
Query 506 TGAACACAATGGCGACATTTGTCCAGCGGAGCTTTGGGAGGCTCTTGATAAAGCTGGCAT 565
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CGAACACAATGGCGACATTTGTCCAGAAGAGCTTTGGGAGGCTCTTGATAAAGCTGGCAT 419
Query 566 TAAAATCAAAGATGAGGAACTTGCTTCTTTTATGGAGCATGTTGATAAGGACAACAACGG 625
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAAAATTAAAGATGAGGAACTCGCTTCTTTTATGGAGCATGTTGATAAGGACAACAACGG 479
Query 626 AATTATAACTTTTGAGGAGTGGAGGGATTTTCTTTTGCTAAACCCTCATGAAGCTACAAT 685
||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 480 AATTATAACTTTTGAAGAGTGGAGGGATTTTCTTTTGCTTAACCCTCATGAAGCCACAAT 539
Query 686 TGAGAACATTTATCATCACTGGGAAAGAGTATGCTTAATAGACATTGGAGAGCAAGCTGT 745
||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 540 TGAAAACATTTATCATCACTGGGAAAGAGTATGCTTAATTGACATTGGGGAACAAGCTGT 599
Query 746 TATACCAGATGGTATAAGTGCACACGCTCAAAGAAGCAAATTACTTCTCGCGGGAGGAAT 805
||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TATACCAGACGGTATAAGTACACACGCTCAAAGAAGCAAATTACTTCTCGCTGGAGGAAT 659
Query 806 AGCAGGGGCTGTTTCTAGAACCGCAACTGCGCCTCTGGACCGTCTGAAAGTTGCTCTGCA 865
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 660 AGCAGGAGCTGTTTCTAGAACCGCGACTGCGCCTCTGGACCGTCTGAAAGTTGCTTTGCA 719
Query 866 AGTTCAACGGACAAATTTGGGTGTTGTCCCGACCATTAAGAAAATATGGAGAGAAGATAA 925
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGTTCAACGTACAAATTTGGGCGTTGTCCCGACCATTAAGAAAATATGGAGAGAAGATAA 779
Query 926 GTTGTTGGGTTTCTTCAGAGGTAATGGGTTAAATGTAGCGAAAGTCGCTCCTGAAAGCGC 985
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 GTTGTTGGGTTTCTTCAGAGGTAATGGGTTAAATGTAACGAAAGTCGCTCCTGAAAGCGC 839
Query 986 TATAAAGTTTGCTGCTTATGAAATGCTGAAA-CCAATAATTGGGGGAGCGGATGGTGACA 1044
|||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||||
Sbjct 840 CATAAAGTTTGCTGCTTATGAAATGCTTAAATCC-ATAATTGGGGGAGTGGATGGTGACA 898
Query 1045 TTGGTACAAGCGGGAGGCTTTTGGCTGGTGGATTGGCTGGTGCAGTGGCTCAAACAGCTA 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTGGTACAAGCGGGAGGCTTTTGGCTGGTGGATTGGCTGGTGCAGTGGCTCAAACAGCTA 958
Query 1105 TTTATCCTATGGATCTCGTGAAGACTCGGTTACAGACTTTTGTGAGTGAAGTTGGGACAC 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTTATCCTATGGATCTCGTGAAGACTCGGTTACAGACTTTTGTGAGTGAAGTTGGGACAC 1018
Query 1165 CAAAGCTGTGGAAACTCACAAAGGATATTTGGATTCAAGAAGGACCCCGAGCTTTTTACA 1224
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CAAAGCTGTGGAAACTCACGAAGGATATTTGGATTCAAGAAGGACCCCGAGCTTTTTACA 1078
Query 1225 GGGGTCTTTGTCCTTCTCTAATTGGGATTATCCCTTACGCAGGAATTGACCTTGCTGCTT 1284
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 GGGGTCTTTGTCCTTCTCTTATTGGGATTATACCTTACGCAGGAATTGACCTTGCTGCTT 1138
Query 1285 ACGAAACTCTTAAAGACTTATCAAGGGCACATTTTCTTCATGACACTGCGGAGCCAGGTC 1344
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1139 ACGAAACTCTTAAAGACTTATCAAGGTCACATTTTCTTCATGACACTGCCGAGCCAGGTC 1198
Query 1345 CTTTGATACAACTGGGATGTGGAATGACTTCTGGAGCTCTTGGAGCATCGTGTGTTTACC 1404
|| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1199 CTCTCATACAACTGGGATGTGGAATGACGTCTGGAGCTCTTGGAGCATCGTGTGTTTACC 1258
Query 1405 CATTACAGGTCATAAGAACAAGAATGCAAGCTGATAGCTCAAAAACAAGCATGGGCCAAG 1464
||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||||
Sbjct 1259 CATTACAGGTCATTAGAACAAGAATGCAAGCTGATATCTCAAAAACTAGCATGATCCAAG 1318
Query 1465 AGTTTCTGAAAACGCTAAGAGGCGAAGGTCTAAAAGGTTTTTACAGAGGAATCTTCCCCA 1524
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1319 AGTTTCTGAAAACGCTAAGAGGCGAAGGTCTAAGAGGTTTTTACAGAGGAATCTTCCCCA 1378
Query 1525 ACTTCTTCAAAGTCATTCCTTCCGCAAGCATTTCGTACCTTGTCTACGAAGCTATGAAGA 1584
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1379 ACTTCTTCAAAGTCATTCCTTCCGCAAGCATTTCGTACCTTGTCTACGAGGCTATGAAGA 1438
Query 1585 AAAATCTTGCCCTTGATTaaaaaaa 1609
||||||| |||||||||||||||||
Sbjct 1439 AAAATCTGGCCCTTGATTAAAAAAA 1463
> Ahg358384 jgi|Araly1|358384|fgenesh1_pg.C_scaffold_8002171
Length=4206
Score = 2021 bits (1094), Expect = 0.0
Identities = 1206/1261 (96%), Gaps = 4/1261 (0%)
Strand=Plus/Plus
Query 168 ATGGAGGCAGAGAAATCCAAGCAAAATCCGGGTAAGAAGCCCGTAGAAGCAACAATGGAG 227
||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGGCAGAGAAATCCAAGAAAAATCCGGTTAAGAAGCCCGTAGAGGCAACAATGGAG 60
Query 228 CACGTGTTGGTGGCATTACGAGAGACCAAGGAGAAGAGAGAGATCAGGATTCAAAAACTG 287
|| |||||||||||||||||||||||||||||| |||| |||| ||| |||| |||||||
Sbjct 61 CATGTGTTGGTGGCATTACGAGAGACCAAGGAGGAGAGGGAGACCAGAATTCGAAAACTG 120
Query 288 TTCGAATTCTTCGACAATTCGAAGTTAGGGTTCTTAGACGATACCCAGATCGAGAAAGGT 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCGAATTCTTCGACAATTCGAAGTTAGGGTTCTTAGACGATACCCAGATCGAGAAAGGT 180
Query 348 TTGTCTTCGCTTAGTATTCCTCCAAAGTATAGGTACGCTAGTGATTTTCTTAAAGTCTGC 407
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 181 TTGTCTTCGCTTAGTATTCCTCAAAATTATAGGTACGCTAGTGATTTTCTTAAAGTCTGC 240
Query 408 GACTCGAATCGAGATGGGCGTGTGGACTACCAGGAGTTTCGTCGTTACATGGA-TGCTAA 466
||| |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||
Sbjct 241 GACGCGAATCGAGATGGGCGTGTGGATTACCAGGAGTTTCGTCGTTACATGGACT-CTAA 299
Query 467 AGAGCTTGAGTTGTACAAGATTTTTCAGGCCATTGATATTGAACACAATGGCGACATTTG 526
||||||||| | |||||||| || |||||||||||| | ||||||||||||||||||||
Sbjct 300 GGAGCTTGAGCTCTACAAGATCTTCCAGGCCATTGATGTCGAACACAATGGCGACATTTG 359
Query 527 TCCAGCGGAGCTTTGGGAGGCTCTTGATAAAGCTGGCATTAAAATCAAAGATGAGGAACT 586
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TCCAGAAGAGCTTTGGGAGGCTCTTGATAAAGCTGGCATTAAAATTAAAGATGAGGAACT 419
Query 587 TGCTTCTTTTATGGAGCATGTTGATAAGGACAACAACGGAATTATAACTTTTGAGGAGTG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 CGCTTCTTTTATGGAGCATGTTGATAAGGACAACAACGGAATTATAACTTTTGAAGAGTG 479
Query 647 GAGGGATTTTCTTTTGCTAAACCCTCATGAAGCTACAATTGAGAACATTTATCATCACTG 706
|||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 480 GAGGGATTTTCTTTTGCTTAACCCTCATGAAGCCACAATTGAAAACATTTATCATCACTG 539
Query 707 GGAAAGAGTATGCTTAATAGACATTGGAGAGCAAGCTGTTATACCAGATGGTATAAGTGC 766
|||||||||||||||||| |||||||| || ||||||||||||||||| ||||||||| |
Sbjct 540 GGAAAGAGTATGCTTAATTGACATTGGGGAACAAGCTGTTATACCAGACGGTATAAGTAC 599
Query 767 ACACGCTCAAAGAAGCAAATTACTTCTCGCGGGAGGAATAGCAGGGGCTGTTTCTAGAAC 826
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 600 ACACGCTCAAAGAAGCAAATTACTTCTCGCTGGAGGAATAGCAGGAGCTGTTTCTAGAAC 659
Query 827 CGCAACTGCGCCTCTGGACCGTCTGAAAGTTGCTCTGCAAGTTCAACGGACAAATTTGGG 886
||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 660 CGCGACTGCGCCTCTGGACCGTCTGAAAGTTGCTTTGCAAGTTCAACGTACAAATTTGGG 719
Query 887 TGTTGTCCCGACCATTAAGAAAATATGGAGAGAAGATAAGTTGTTGGGTTTCTTCAGAGG 946
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CGTTGTCCCGACCATTAAGAAAATATGGAGAGAAGATAAGTTGTTGGGTTTCTTCAGAGG 779
Query 947 TAATGGGTTAAATGTAGCGAAAGTCGCTCCTGAAAGCGCTATAAAGTTTGCTGCTTATGA 1006
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 TAATGGGTTAAATGTAACGAAAGTCGCTCCTGAAAGCGCCATAAAGTTTGCTGCTTATGA 839
Query 1007 AATGCTGAAA-CCAATAATTGGGGGAGCGGATGGTGACATTGGTACAAGCGGGAGGCTTT 1065
|||||| ||| || ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 AATGCTTAAATCC-ATAATTGGGGGAGTGGATGGTGACATTGGTACAAGCGGGAGGCTTT 898
Query 1066 TGGCTGGTGGATTGGCTGGTGCAGTGGCTCAAACAGCTATTTATCCTATGGATCTCGTGA 1125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TGGCTGGTGGATTGGCTGGTGCAGTGGCTCAAACAGCTATTTATCCTATGGATCTCGTGA 958
Query 1126 AGACTCGGTTACAGACTTTTGTGAGTGAAGTTGGGACACCAAAGCTGTGGAAACTCACAA 1185
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 959 AGACTCGGTTACAGACTTTTGTGAGTGAAGTTGGGACACCAAAGCTGTGGAAACTCACGA 1018
Query 1186 AGGATATTTGGATTCAAGAAGGACCCCGAGCTTTTTACAGGGGTCTTTGTCCTTCTCTAA 1245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 AGGATATTTGGATTCAAGAAGGACCCCGAGCTTTTTACAGGGGTCTTTGTCCTTCTCTTA 1078
Query 1246 TTGGGATTATCCCTTACGCAGGAATTGACCTTGCTGCTTACGAAACTCTTAAAGACTTAT 1305
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTGGGATTATACCTTACGCAGGAATTGACCTTGCTGCTTACGAAACTCTTAAAGACTTAT 1138
Query 1306 CAAGGGCACATTTTCTTCATGACACTGCGGAGCCAGGTCCTTTGATACAACTGGGATGTG 1365
||||| |||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 1139 CAAGGTCACATTTTCTTCATGACACTGCCGAGCCAGGTCCTCTCATACAACTGGGATGTG 1198
Query 1366 GAATGACTTCTGGAGCTCTTGGAGCATCGTGTGTTTACCCATTACAGGTCATAAGAACAA 1425
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GAATGACGTCTGGAGCTCTTGGAGCATCGTGTGTTTACCCATTACAGGTCATAAGAACAA 1258
Query 1426 G 1426
|
Sbjct 1259 G 1259
> Ahg487557 jgi|Araly1|487557|fgenesh2_kg.6__691__AT5G07320.1
Length=1948
Score = 1306 bits (707), Expect = 0.0
Identities = 1180/1405 (84%), Gaps = 46/1405 (3%)
Strand=Plus/Plus
Query 222 ATGGAGCACGTGT-TGGTGGCATTACGAGAGACCAAGGA-GAAGAGAGAGATCAGGATTC 279
|||||||| || | | |||| ||||| ||||| | ||| | ||||||||||||||||||
Sbjct 364 ATGGAGCATGT-TCTATTGGCGTTACGTGAGACTATGGATG-AGAGAGAGATCAGGATTC 421
Query 280 AAAAACTGTTCGAATTCTTCGACAATTCGAAGTTAGGGTTCTTAGACGATACCCAGATCG 339
| |||| || |||||||| |||||||| |||||||||||||| || |||||||||
Sbjct 422 GTAGTTTGTTTGATTTCTTCGATAATTCGAATTTAGGGTTCTTAGATTATGCCCAGATCG 481
Query 340 AGAAA-GGT-TTGTCTTCGCTT-AGTATTCCTCCAAAGTATAGGTACGCTAGTGATTT-T 395
| ||| ||| ||| |||||||| || |||||||| |||| | ||||||||| ||||| |
Sbjct 482 A-AAAGGGTCTTG-CTTCGCTTCAG-ATTCCTCCTGAGTACAAGTACGCTAGAGATTTGT 538
Query 396 CTTAAAGTCTGCGACTCGAATCGAGATGGGCGTGTGGACTACCAGGAGTTTCGTCGTTAC 455
||| |||||||||| | |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 539 -TTAGAGTCTGCGACGCCAATCGAGATGGGCGTGTGGATTACCAGGAGTTTCGTCGATAC 597
Query 456 ATGGATGCTAAAGAGCTTGAGTTGTACAAGATTTTTCAGGCCATTGATATTGAACACAAT 515
|| |||||||| ||||||||| |||| | |||||| || ||||||||| |||| ||||||
Sbjct 598 ATTGATGCTAAGGAGCTTGAGCTGTATAGGATTTTCCAAGCCATTGATGTTGAGCACAAT 657
Query 516 GGC-GACA-TTTGTCCAGCGGAGCTTTGGGAGGCTCTTGATAAAGCTGGCATTAAAATCA 573
||| | || |||| || | |||||||||||||||||||| ||| || |||||| | |||
Sbjct 658 GGCTG-CATTTTG-CCTGAGGAGCTTTGGGAGGCTCTTGTTAAGGCCGGCATTGAGATCG 715
Query 574 AAGATGAGGAACTTGCTTC-TTTTATGGAGCATGTTGATAAGGACAACAACGGAATTATA 632
| ||||||||||| || || |||| |||||||||||||||||||||| || |||| ||||
Sbjct 716 ATGATGAGGAACTCGC-TCGTTTTGTGGAGCATGTTGATAAGGACAATAATGGAACTATA 774
Query 633 ACTTTTGAGGAGTGGAGGGATTTTCTTTTGCTAAACCCTCATGAAGCTACAATTGAGAAC 692
|| ||||| || ||||| |||||||||||| || ||||||||||||| || ||||| |||
Sbjct 775 ACGTTTGAAGAATGGAGAGATTTTCTTTTGTTATACCCTCATGAAGCCACTATTGAAAAC 834
Query 693 ATTTATCATCACTGGGAAAGAGTATGCTTAATAGACATTGGAGAGCAAGCTGTTATACCA 752
|||||||||||||||||||| || ||||| ||||| ||||| |||||||||||||||||
Sbjct 835 ATTTATCATCACTGGGAAAGGGTGTGCTTGATAGATATTGGGGAGCAAGCTGTTATACCG 894
Query 753 GATGGTATAAGTGCACACGCT-CAAAGAAGCAAATTACTTCTCGCGGGAGGAATAGCAGG 811
||||||||||| ||| | | ||||||||| |||||||||||| || ||| |||| ||
Sbjct 895 GATGGTATAAGCAAACATG-TGAAAAGAAGCAGATTACTTCTCGCTGGTGGACTAGCCGG 953
Query 812 GGCTGTTTCTAGAACCGCAACTGCGCCTCTGGACCGTCTGAAAGTTGCTCTGCAAGTTCA 871
|||||||||||||| || || ||||||||||| || |||||||||| | ||||||||||
Sbjct 954 AGCTGTTTCTAGAACTGCTACCGCGCCTCTGGATCGCCTGAAAGTTGTTTTGCAAGTTCA 1013
Query 872 ACGGACA-AATTTGGGTGTTGTCCCGACCATTAAGAAAATATGGAGAGAAGATAAGTTGT 930
| || || | ||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 1014 AAGGGCACACGCAGGG-GTCCTCCCGACCATTAAGAAGATATGGAGAGAAGATAAGTTGA 1072
Query 931 TGGGTTTCTTCAGAGGTAATGGGTTAAATGT-AGCGAAAGTCGCTCCTGAAAGCGCTA-T 988
||||||| || |||||||||||||||||||| | ||| || |||||||||||||| | |
Sbjct 1073 TGGGTTTTTTTAGAGGTAATGGGTTAAATGTCA-TGAAGGTTGCTCCTGAAAGCGCCATT 1131
Query 989 AAAGTTTGCTGCTTATGAAATGCTGAAACCAATAATTGGGGGAGCGGATGGTGACATTGG 1048
||| |||| |||||| |||||||| ||||| || |||||||| | ||||||||| |||||
Sbjct 1132 AAATTTTG-TGCTTACGAAATGCTAAAACCCATGATTGGGGGGGAGGATGGTGATATTGG 1190
Query 1049 TACAAGCGGGAGGCTTTTGGCTGGTGGATTGGCTGGTGCAGTGGCTCAAACAGCTATTTA 1108
|||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||||
Sbjct 1191 TACAAGCGGGAGGCTTTTGGCTGGTGGAATGGCTGGTGCATTAGCTCAAACCGCTATTTA 1250
Query 1109 TCCTATGGATCTCGTGAAGACTCGGTTACAGACTTTTGTGAGTGAAGTTGGGA---CACC 1165
||||||||||| |||||||||||||||||||||| ||| ||||||| ||| | ||||
Sbjct 1251 CCCTATGGATCTAGTGAAGACTCGGTTACAGACTTGTGTCAGTGAAGGTGGAAAGGCACC 1310
Query 1166 AAAGCTGTGGAAACTCACAAAGGATATTTGGATTCAAGAAGGACCCCGAGCTTTTTACAG 1225
||| ||||||| |||||||| ||||| ||| | ||||| ||||| || || || ||||
Sbjct 1311 TAAGTTGTGGAAGCTCACAAAAGATATATGGGTACAAGAGGGACCTCGGGCGTTCTACAA 1370
Query 1226 GGGTCT-TTGTCCTTCTCTAATTGGGATTATCCCTTACGCAGGAATTGACCTTGCTGCTT 1284
|||||| || ||||||||| |||||||||| ||||| |||||||||||||| ||||| |
Sbjct 1371 GGGTCTGTT-TCCTTCTCTTCTTGGGATTATTCCTTATGCAGGAATTGACCTCGCTGCAT 1429
Query 1285 ACGAAACTCTTAAAGACTTATCAAGGGCACATTTTCTTCATGACACTGCGGAGCCAGGTC 1344
||||||| || |||||||| || || || || ||||||| ||||||| |||| ||||
Sbjct 1430 ACGAAACGCTAAAAGACTTGTCGAGAACATATATTCTTCAGGACACTG---AGCCGGGTC 1486
Query 1345 CTTTGATACAACTGGGATGTGGAATGACTTCTGGAGCTCTTGGAGCATCGTGTGTTTACC 1404
|| ||||||| ||| | ||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 1487 CTCTGATACAGCTGAGCTGTGGAATGACATCAGGAGCTCTTGGAGCATCATGTGTTTACC 1546
Query 1405 CATTACAGGTCA-TAAGAACAAGAATGCAAGCTGATAGCTCAAAAACAAGCA-TGG-GCC 1461
| |||||||| | ||||||||||||||||||| ||||| ||| | || | || || ||
Sbjct 1547 CGTTACAGGT-AGTAAGAACAAGAATGCAAGCGGATAGTTCAGATACGA-CAATGAAGC- 1603
Query 1462 AAGAGTTTCTGAAAACGCT-AAGAGGCGAAGGTCTAAAAGGTTTTTACAGAGGAATCTTC 1520
|||||||| |||||||| | || |||||||||||| | |||||| ||||||||| ||||
Sbjct 1604 AAGAGTTTATGAAAACGATGAA-AGGCGAAGGTCTGAGAGGTTTCTACAGAGGACTCTTA 1662
Query 1521 CCCAA-CTTCTTCAAAGTCA-TTCCTTCCGCAAGCATTTCGTACCTTGTCTACGAAGCTA 1578
||||| ||||| |||||| | |||| |||||||||| ||||| |||| || |||||||
Sbjct 1663 CCCAATCTTCT-CAAAGT-AGTTCCAGCCGCAAGCATCACGTACATTGTTTATGAAGCTA 1720
Query 1579 TGAAGAAAAATCTTGCCCTTGATTa 1603
||||||||||| | || ||||||||
Sbjct 1721 TGAAGAAAAATATGGCTCTTGATTA 1745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68638621490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5