BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61830.1
Length=1219
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950946 jgi|Araly1|950946|scaffold_802833.1 1552 0.0
> Ahg950946 jgi|Araly1|950946|scaffold_802833.1
Length=992
Score = 1552 bits (840), Expect = 0.0
Identities = 938/987 (95%), Gaps = 0/987 (0%)
Strand=Plus/Plus
Query 66 GCGACGCGAGCGAAGAAGACGATGACGAACAAGGAGAAAGCTCGAGAGAGAAGGGAGAAA 125
|||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1 GCGACGAGAGCGAAGAAGACGATGACGAACAAGGAGAAAGCGCGGGAGAGAAGGGAGAAA 60
Query 126 AGAATGCAGGAGATCTCTCTCCTTCGAACTATTCCTTACTCTGACCACCATAGGTGGTGG 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAATGCAGGAGATCTCTCTCCTTCGAACTATTCCTTACTCTGACCACCATAGGTGGTGG 120
Query 186 TCTTGTGAAAATGTAGCAGTAGTGACTGGTTCAAACCGCGGGATTGGATTCGAGATTGCA 245
|||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||
Sbjct 121 TCTTCTGAAAATGTAGCAGTGGTGACCGGTTCAAACCGCGGGATTGGACTCGAGATTGCA 180
Query 246 AGACAGCTTGCGGTTCACGGATTGACGGTTGTTCTTACAGCTAGAAACGTGAATGCTGGT 305
||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 181 AGACAGCTTGCGGGTCACGGATTGACGGTTGTTCTTACAGCCAGAAACGTGGATGCTGGT 240
Query 306 CTTGAAGCAGTTAAATCTTTGAGGCACCAAGAAGAAGGTCTCAAGGTTTATTTTCATCAA 365
||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||
Sbjct 241 CTTGAAGCAGTTAAATCCTTGAGGCGCCAAGAAGAAGGTCTCAAGGTTGATTTTCATCAG 300
Query 366 CTTGATGTCACAGACTCTTCGTCGATTAGAGAGTTTGGTTGCTGGCTTAAGCAAACATTT 425
||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 301 CTTGATGTCACGGACTCTTCTTCGATTAGAGAGTTTGGTTGCTGGATTAAGCAAACATTT 360
Query 426 GGAGGTTTAGATATTCTCGTGAATAATGCAGGTGTTAACTACAATCTCGGCTCAGATAAT 485
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 361 GGAGGTTTAGATATTCTCGTGAACAATGCAGGTGTCAACTATAATCTCGGCTCAGATAAT 420
Query 486 ACGGTTGAATTTGCTGAAACAGTTATATCTACTAACTACCAAGGAACCAAAAACATGACA 545
||||||||||||| || |||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 421 TCGGTTGAATTTGCCGAGACAGTTATCTCTACCAACTACCAAGGAACCAAAAACGTGACA 480
Query 546 AAAGCTATGATACCCTTGATGAGACCATCTCCTCATGGCGCTCGTGTAGTCAATGTTAGT 605
|||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 481 AAAGCTATGATACCATTGATGAGACCATCTCCTCATGGCGCTCGTATTGTCAACGTTAGT 540
Query 606 TCTCGGCTAGGTAGAGTAAATGGAAGACGTAATAGACTGGCAAATGTAGAGTTGAGAGAT 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTCGGCTAGGTAGAGTAAATGGAAGACGTAATAGACTGGCAAATGTAGAGTTGAGAGAT 600
Query 666 CAGCTAAGCAGTCCAGATTTGCTGACCGAGGAACTTATAGACAGAACTGTCTCTAAATTC 725
|||||||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 601 CAGCTAAGCAATCCGGATTTGCTGACTGAGGAACTTATAGACAGAACTGTTTCTAAATTC 660
Query 726 ATCAACCAAGTAAAAGACGGAACTTGGGAATCAGGCGGGTGGCCTCAGACATTCACTGAC 785
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 661 ATCAACCAAGTAAAAGACGGAAGTTGGGAATCAGGCGGGTGGCCTCAGACATTCACCGAC 720
Query 786 TACTCCATGTCTAAGCTTGCAGTCAATGCTTACACGAGACTAATGGCAAAAGAACTTGAG 845
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 721 TACTCCATGTCTAAGCTTGCCGTCAATGCTTACACGAGACTAATGGCAAAAGAACTTTCG 780
Query 846 AGACGAGGAGAGGAAGAGAAGATTTATGTTAACAGCTTTTGCCCTGGTTGGGTGAAGACT 905
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 781 AGAAGAGGAGAGGAAGAGAAGATTTATGTTAACAGCTTTTGTCCTGGTTGGGTGAAAACT 840
Query 906 GCGATGACTGGCTACGCCGGAAATATGCCACCTGAAGATGCAGCTGATACTGGAGTTTGG 965
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCTATGACTGGCTACGCCGGAAATATGCCACCTGAAGATGCAGCTGATACTGGAGTTTGG 900
Query 966 CTTAGCCTGGTCCTTTCCGAAGAGGCAGTAACCGGAAAATTCTTCGCAGAGAGACGTGAG 1025
|||||||| || ||||||||||||||| |||||||||||||||| |||||||| ||||||
Sbjct 901 CTTAGCCTAGTTCTTTCCGAAGAGGCACTAACCGGAAAATTCTTTGCAGAGAGGCGTGAG 960
Query 1026 ATCAACTTCTGAGGGTTGTTGAATGTT 1052
||||||||||||||||||||||| |||
Sbjct 961 ATCAACTTCTGAGGGTTGTTGAAAGTT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45518762898
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5