BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61840.1
Length=1672
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496352 jgi|Araly1|496352|fgenesh2_kg.8__2168__AT5G61840.1 2296 0.0
> Ahg496352 jgi|Araly1|496352|fgenesh2_kg.8__2168__AT5G61840.1
Length=1497
Score = 2296 bits (1243), Expect = 0.0
Identities = 1438/1526 (94%), Gaps = 38/1526 (2%)
Strand=Plus/Plus
Query 130 ACTACTTCTTCTGACATTTCAGCTGTTCTAGTTGATCTTTATATACTTTATATGATCT-G 188
||| ||||||| ||| || ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1 ACTTCTTCTTCCGACGTTCCAGCTGTTCTAGTTGATCTTTATATAC-TTATATGATCTGG 59
Query 189 GGATTTTGAAGAGTTTTTAGGGAGGAACCAAAATTTCTGAGAGAGAAAAATGAAGTTATC 248
|||||||||||| ||||||||||| | || |||||||||||||||||
Sbjct 60 GGATTTTGAAGA--TTTTAGGGAGG-------------G-GA-AGAAAAATGAAGTTATC 102
Query 249 GAGCTGCGTTTTGATCTTCCTTCTATGTAA---CACATT-CTC-C-TCGATTTCTGCTTT 302
|||||| ||||||||||||||||| ||||| ||| || ||| | |||||||||||||
Sbjct 103 GAGCTGGGTTTTGATCTTCCTTCTTTGTAACCTCACCTTCCTCTCGACGATTTCTGCTTT 162
Query 303 CCGTCTGAGTCGGAGTCAACCAACTGAGCGAATTTCAGGTAGTGCTGGTGATGTGTTGGA 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CCGTCTGAGTCGGAGTCAACCAACTGAGCGAATTTCAGGTAGTGCTGGTGATGTGTTGGA 222
Query 363 AGATGATCCCGTGGGAAGACTGAAAGTCTTTGTTTATGAGCTTCCAAGTAAATACAACAA 422
||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGATAATCCTGTGGGAAGACTGAAAGTCTTTGTTTATGAGCTTCCAAGTAAATACAACAA 282
Query 423 GAAGATACTTCAGAAGGATCCGAGATGTCTAAACCACATGTTTGCTGCTGAGATATATAT 482
|||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 283 GAAGATACTTCACAAGGACCCGAGGTGTCTAAACCATATGTTTGCTGCTGAGATATATAT 342
Query 483 GCAACGGTTTCTTTTATCTAGCCCAGTTCGAACACTTAATCCCGAGGAAGCTGATTGGTT 542
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 343 GCAACGGTTTCTTTTATCCAGCCCAGTTCGAACACTTAATCCCGAGGAAGCTGATTGGTT 402
Query 543 CTACGTACCTGTGTACACCACTTGTGATCTCACGCCTAATGGGCTTCCTCTTCCTTTTAA 602
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TTACGTCCCTGTGTATACCACTTGTGATCTCACGCCTAATGGGCTTCCTCTTCCTTTTAA 462
Query 603 ATCTCCACGAATGATGAGAAGTGCCATTCAGCTTATTGCTTCCAATTGGCCATACTGGAA 662
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 463 ATCTCCACGGATGATGAGAAGTGCCATTCAGCTTATTGCTTCCAACTGGCCATACTGGAA 522
Query 663 TCGCACAGAAGGAGCAGACCACTTCTTTGTTGTGCCTCATGACTTTGGAGCCTGTTTCCA 722
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 523 TCGCACAGAAGGAGCAGACCACTTCTTTGTCGTGCCTCATGACTTTGGAGCCTGTTTCCA 582
Query 723 TTATCAAGAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGAGCTACACT 782
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 583 TTATCAAGAAGAGAAGGCAATAGGAAGAGGAATACTACCCTTGCTTCAACGGGCTACACT 642
Query 783 GGTGCAGACATTTGGACAAAGGAATCATGTTTGCTTGAAAGAAGGTTCAATCACTGTTCC 842
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 643 GGTGCAGACATTTGGACAAAGGAATCATGTTTGCTTGAAGGAGGGTTCAATCACTGTTCC 702
Query 843 TCCATATGCTCCACCACAGAAGATGCAGTCACACTTAATTCCCGAAAAAACTCCTCGATC 902
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 703 TCCATATGCTCCACCACAGAAGATGCAGTCACACTTAATTCCTGAGAAAACTCCTCGATC 762
Query 903 CATCTTCGTTTATTTCAGAGGATTGTTTTATGATGTGGGAAATGACCCTGAGGGTGGTTA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 763 CATCTTCGTTTATTTCAGAGGATTGTTTTATGATGTGGGAAATGACCCTGAGGGTGGCTA 822
Query 963 TTATGCGAGGGGTGCAAGAGCAGCTGTATGGGAAAACTTCAAAGACAATCCGCTGTTTGA 1022
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 823 TTATGCAAGGGGTGCACGAGCAGCTGTATGGGAAAACTTCAAAGACAATCCGCTGTTCGA 882
Query 1023 CATCTCAACAGAGCACCCAACAACATATTATGAGGACATGCAGAGAGCAATCTTCTGCCT 1082
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 883 CATCTCAACAGAGCACCCAACAACATATTATGAGGACATGCAGAGAGCAATCTTCTGCTT 942
Query 1083 ATGCCCACTTGGATGGGCCCCATGGAGTCCAAGACTGGTGGAAGCAGTGATATTCGGTTG 1142
|||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||
Sbjct 943 ATGCCCACTTGGATGGGCACCATGGAGTCCAAGACTGGTGGAAGCTGTGATCTTTGGTTG 1002
Query 1143 CATCCCTGTGATCATAGCAGACGACATCGTGTTACCTTTTGCAGATGCAATCCCTTGGGA 1202
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1003 CATCCCTGTGATCATAGCAGATGACATCGTGTTACCTTTTGCAGATGCGATCCCTTGGGA 1062
Query 1203 AGATATTGGTGTGTTTGTGGATGAGAAAGATGTCCCTTACCTGGACACAATACTCACATC 1262
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1063 AGATATTGGTGTGTTTGTGGATGAGAAAGATGTTCCTTACCTGGACACAATACTCACATC 1122
Query 1263 GATCCCACCAGAGGTTATACTGAGAAAACAGAGGTTGTTGGCAAACCCGTCGATGAAACA 1322
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1123 GATCCCTCCAGAAGTTATACTGAGAAAACAGAGGTTGTTGGCAAATCCGTCGATGAAACA 1182
Query 1323 AGCCATGCTGTTCCCGCAACCGGCTCAACCAGGGGATGCGTTTCATCAAGTATTGAATGG 1382
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1183 AGCCATGCTGTTTCCGCAACCGGCTCAACCAGGGGATGCGTTTCATCAAGTGTTGAATGG 1242
Query 1383 GTTGGCTCGTAAGCTGCCTCATGAGAGGAGTGTGTATCTGAGACCAGGTGAGAAGCTGTT 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 GTTGGCTCGTAAGCTGCCTCATGAGAGGAGTGTGTATCTGAGACCAGGTGAGAAGCTGTT 1302
Query 1443 GAACTGGACGGCAGGACCGGTCGCTGATCTGAAACCTTGGTAAGGACCAGTGTTGGAATT 1502
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1303 GAACTGGACGGCAGGACCGGTGGCTGATCTGAAACCTTGGTAAGGACCAGTGTTGGAATT 1362
Query 1503 TGATTGAATGAGC-TATTGTTTGGTTGGTTTCTGTCTTCTCGTGTCTGTATTTTGTAGAA 1561
|||||||| || | ||||| | |||||| |||| | |||||||||||||||||||
Sbjct 1363 TGATTGAAGGATCCTATTG---G-TTGGTT-CTGT-T----GTGTCTGTATTTTGTAGAA 1412
Query 1562 TCATAACttttttttGCTATGTAGAAGGGAAAAAGCTTTG-TCATTGTAATGTAACTAGA 1620
||||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 1413 TCATAACCTTTTTTTGCTATGTAGAAGGGAAAAAGCTT-GATCATTGTAATGAAACTAGA 1471
Query 1621 ATCCTTTTGACATCTCACGAGAAAGA 1646
|||||||||||||||||||||| |||
Sbjct 1472 ATCCTTTTGACATCTCACGAGAGAGA 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62696543270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5