BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61850.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917939 jgi|Araly1|917939|Al_scaffold_0008_2690 1967 0.0
> Ahg917939 jgi|Araly1|917939|Al_scaffold_0008_2690
Length=1281
Score = 1967 bits (1065), Expect = 0.0
Identities = 1213/1282 (95%), Gaps = 20/1282 (2%)
Strand=Plus/Plus
Query 1 ATGGATCCTGAAGGTTTCACGAGTGGCTTATTCCGGTGGAACCCAACGAGAGCATTGGTT 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1 ATGGATCCTGAAGGTTTCACGAGTGGCTTATTCCGATGGAACCCAACGAGAGCAATGGTT 60
Query 61 -CAAGCACCACCTCCGGTTCCACCTCCGCTGCAGCAACAGCCGGTGACACCGCAGACGGC 119
| |||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||
Sbjct 61 GC-AGCACCACCTCCGGTTCCACCTCCGCCGCAGCAACAGCCGGCAACACCTCAGATGGC 119
Query 120 TGCTTTTGGGATGCGACTTGGTGGTTTAGAGGGACTATTCGGTCCGTACGGTATACGTTT 179
||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 120 GGCTTTTGGGATGCGACTTGGTGGTTTAGAGGGACTGTTCGGAGCTTACGGTATACGTTT 179
Query 180 CTACACGGCGGCGAAGATAGCGGAGTTAGGTTTTACGGCGAGCACGCTTGTGGGTATGAA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTACACGGCGGCGAAGATAGCGGAGTTAGGTTTTACGGCGAGCACGCTTGTGGGTATGAA 239
Query 240 GGACGAGGAGCTTGAAGAGATGATGAATAGTCTCTCTCATATCTTTCGTTGGGAGCTTCT 299
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 GGACGAGGAGCTTGAGGAGATGATGAATAGTCTCTCTCACATCTTTCGTTGGGAGCTTCT 299
Query 300 TGTTGGTGAACGGTACGGTATCAAAGCTGCCGTTAGAGCTGAACGGAGACGATTGCAAGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTTGGTGAACGGTACGGTATCAAAGCTGCCGTTAGAGCTGAACGGAGACGATTGCAAGA 359
Query 360 AGAGGAGGAAGAGGAATCTTCTAGACGCCGTCATTTGCTACTCTCCGCCGCTGGTGATTC 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGAGGAGGAGGAGGAATCTTCTAGACGCCGTCATTTGCTACTCTCCGCCGCTGGTGATTC 419
Query 420 CGGTACTCATCACGCTCTTGATGCTCTCTCCC------A--A---GA-AGGGTTATCTGA 467
|||||||||||||||||||||||||||||||| | | || ||||||||| ||
Sbjct 420 CGGTACTCATCACGCTCTTGATGCTCTCTCCCAAGAAGATGATTGGACAGGGTTATCAGA 479
Query 468 GGAACCGGTGCAGCAACAAGACCAGACTGATGCGGCGGGGAATAACGGCGGAGGAGGAAG 527
|||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 480 GGAACCGGTGCAACAGCAAGACCAGACAGATGCGGCTGGGAATAACGGCGGAGGAGGAAG 539
Query 528 TGGTTACTGGGACGCAGGTCAAGGAAAGATGAAGAAGCAACAGCAGCAGAGACGGAGAAA 587
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 540 TGGTTACTGGGAAGCAGGTCAAGCAAAGATGAAGAAGCAACAGCAGCAGAGACGGAGAAA 599
Query 588 GAAACCAATGCTGACGTCAGTGGAAACCGACGAAGACGTCAACGAAGGTGAGGATGACGA 647
|||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 600 GAAACCGATGGTGACGTCAGTGGAAACCGACGATGACGTCAACGAAGGTGATGATGACGA 659
Query 648 CGGGATGGATAACGGCAACGGA---GGTAGTGGT---TTGGGGACAGAGAGACAGAGGGA 701
|||||||||||||||||||||| ||| ||||| |||||||||||||||||||| ||
Sbjct 660 CGGGATGGATAACGGCAACGGAGGTGGTGGTGGTGGATTGGGGACAGAGAGACAGAGAGA 719
Query 702 GCATCCGTTTATCGTAACGGAGCCTGGGGAAGTGGCACGTGGCAAAAAGAACGGCTTAGA 761
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 GCACCCGTTTATCGTAACGGAGCCTGGGGAAGTGGCACGTGGCAAAAAGAACGGTTTAGA 779
Query 762 TTATCTGTTCCACTTGTACGAACAATGCCGTGAGTTCCTTCTTCAGGTCCAGACAATTGC 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TTATCTGTTCCACTTGTACGAACAATGCCGTGAGTTCCTTCTTCAGGTCCAGACAATTGC 839
Query 822 TAAAGACCGTGGCGAAAAATGCCCCACCAAGGTGACGAACCAAGTATTCAGGTACGCGAA 881
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 840 TAAAGACCGTGGCGAAAAATGCCCCACCAAGGTGACGAACCAAGTGTTCAGGTACGCGAA 899
Query 882 GAAATCAGGAGCGAGTTACATAAACAAGCCTAAAATGCGACACTACGTTCACTGTTACGC 941
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 900 GAAATCGGGAGCGAGTTACATAAACAAGCCCAAAATGCGACACTACGTCCACTGTTACGC 959
Query 942 TCTCCACTGCCTAGACGAAGAAGCTTCAAATGCTCTCAGAAGAGCGTTTAAAGAACGCGG 1001
||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||
Sbjct 960 TCTCCACTGCCTAGACGAAGACGCTTCAAACGCTCTCCGAAGAGCGTTTAAAGAACGCGG 1019
Query 1002 TGAGAACGTTGGCTCATGGCGTCAGGCTTGTTACAAGCCACTTGTGAACATCGCTTGTCG 1061
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 TGAGAACGTTGGCTCGTGGCGTCAGGCTTGTTACAAGCCACTTGTGAACATTGCTTGTCG 1079
Query 1062 TCATGGCTGGGATATAGACGCCGTCTTTAACGCTCATCCTCGTCTCTCTATTTGGTATGT 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 TCATGGCTGGGATATAGACGCCGTCTTTAACGCTCATCCTCGTCTCTCTATTTGGTACGT 1139
Query 1122 TCCAACAAAGCTGCGTCAGCTTTGCCATTTGGAGCGGAACAATGCGGTTGCTGCGGCTGC 1181
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 1140 TCCAACTAAGCTGCGTCAGCTTTGCCATTTGGAGCGGAACAATGCCGTGGCTGCGGCCGC 1199
Query 1182 GGCTTTAGTTGGCGGTATTAGCTGTACCGGATCGTCGACGTCTGGACGTGGTGGATGCGG 1241
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1200 GGCTTTGGTTGGCGGTATTAGCTGTACCGGATCGTCTACGTCTGGCCGTGGTGGTTGCGG 1259
Query 1242 CGGCGACGACTTGCGTTTCTAG 1263
||||||||||||||||||||||
Sbjct 1260 CGGCGACGACTTGCGTTTCTAG 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5