BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61865.1
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496355 jgi|Araly1|496355|fgenesh2_kg.8__2171__AT5G61865.1 2145 0.0
> Ahg496355 jgi|Araly1|496355|fgenesh2_kg.8__2171__AT5G61865.1
Length=1414
Score = 2145 bits (1161), Expect = 0.0
Identities = 1344/1427 (94%), Gaps = 33/1427 (2%)
Strand=Plus/Plus
Query 1 AGAAACGACTGTTTGAAATTCGAATCCATTTCTCTTCGGACTTGTGTGATAACTGATTTC 60
||||||||||||||||||||||||||| ||||||||| ||||||||| | | | ||
Sbjct 1 AGAAACGACTGTTTGAAATTCGAATCC-TTTCTCTTCCAACTTGTGTG---A-T-A--TC 52
Query 61 CTCCTACAATGGAGTTCCCGCCAAGAGCGTTTTATCCACGGAGATTCCAGGCCTCTCCGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 53 CTCCTACAATGGAGTTCCCGCCAAGAGCGTTTTATCCACGGAGATTCCAGGCCCCTCCGG 112
Query 121 CGCAATACACGGCGGAGGAAAGTGCTGCAGCAG-TA--TCGGCGCCAGATCTCCGAGATA 177
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 113 CGCAATACACGGCGGAGGAAAGTGCTGCAGCAGCAACGGCGGCGCCAGATCTCCGAGATA 172
Query 178 AGCTCGCGACACTGGTCGATCGCACCAAGAAAGTGAAAATGGCGTACCATCAACTCCAAT 237
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 173 AGCTCGCGACGCTGGTCGATCGCAACAAGAAAGTGAAAATGGCGTACCATCAACTCCAAT 232
Query 238 CGCAGATCGCGTTCGGCCTTGTCGAAGCAGGTGAAGTTTTCGATTCTCTGGCGATCCCTT 297
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 233 CGCAGATCGCGTTCGGCCTTGTCGAAGCCGGTGAAGTTTTTGATTCTCTGGCGATCCCTT 292
Query 298 TGATGAAGTTGGTTGGGCTGAAAACGTCGGAGATGGAGAGTGAAGGGAGACACTCCGCCT 357
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 293 TGATGAAGCTGGTTGGGCTGAAAACGTCGGAGATGGAGAGTGAAGGGAGACACTCCACTT 352
Query 358 TTATTTTCAATACTGAAAGGTATCATCATATGGATACTG--C----------ACGGTCTG 405
||||||||||||||| || | || ||||||||||||||| | |||| |||
Sbjct 353 TTATTTTCAATACTG-AACG-AT-ATCATATGGATACTGCCCAAAATGGAGTACGGACTG 409
Query 406 GTGATCTGAACATTCAAATTCGCAGTTCAAAGGAAGAAAACTATGCTGCTAAAGCCGAAA 465
|||||||||||| |||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 410 GTGATCTGAACAATCAAATTCGCAGTTCAAAGGTAGAAAATTATGCTGCTAAAGCC-AAA 468
Query 466 -CAGCGGGGAAAGAGATCTTGCACAAGCATAAGGGGCAGCTGAGACAGTTAGTTCATATG 524
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 469 TCAGCGGGAAAAGAGATCTTGCACAAGCATAAGGGGCAGCTGAGACAGCTAGTTCATATG 528
Query 525 CTTAAGCACATTGAAACACAGGTGAATTCACATCGGGAAGATATTCTGCAGATGGTTGAC 584
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 529 CTTAAGCACATTGAAACACAGGTGAATTCACATCGGGAAGACATTCTGCAGATGGTTGAC 588
Query 585 GATCGTAGAACCTTCTTCCAAGAATTCATCCAGAAGTCTCTTTATTACCTAAGCTCGGTT 644
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 589 GATCGTAGAACCTTCTTCCAAGAATTCATCCAGAAATCTCTTTACTACCTAAGCTCGGTT 648
Query 645 CACAGCCAAAACCATGACACTTTCCCTGTCACAGTGAAGCTCCTTCGCGTACTATTTAAT 704
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 649 CACAGCAAAAACCATGACACTTTCCCTGTCACAGTGAAGCTCCTTCGCGTCCTATTTAAT 708
Query 705 AACATCAACGAGGTGCTTGGTTCAGTAGATACTGGAGTCAATGATTTTATGCAGGCTTTA 764
||||||||||| |||| ||||||||||||| ||| || |||||| ||||||||||||||
Sbjct 709 AACATCAACGAAATGCTCGGTTCAGTAGATAGTGGTGTTAATGATCTTATGCAGGCTTTA 768
Query 765 GCAAAGAATATGTGTCACCCGATGACCAAGTACGTAGGCAACTTGGCTGCTGAAATAAAG 824
|||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 769 GCAATGAATATGTGTCACCCGATGACCAAGTACGTAGACAACTTGGCAGCTGAAATAAAG 828
Query 825 CATGGCCCTTGTGTGCAACTGATGAATGTAGTGAATGAGATGGAGAGATCAAACTCAGAT 884
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 829 CATGGCCCTTGTGTGCAACTGATGAATGTAGTGAATGAGATGGAGAGAGCAAACTCAGAT 888
Query 885 ACAAGGAGAGAGCTACAAGATGCTAGAGAAAGGATTAGACTTGCAGAAGAGACAAAGATC 944
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 889 ACAAGGAGAGAGCTACAAGATGCTAGAGAAAGGATTAGACTCGCAGAAGAGACAAAGATC 948
Query 945 AACGCTTTATCAAAGCTGAAAAAAGCTGAAGATCAAGTTCAGAGGATGACAACATCTGCC 1004
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 949 AACACTTTATCAAAGCTGAAAAAAGCTGAAGATCAAGTTCAGAGAATGACAACATCTGCC 1008
Query 1005 AAATTTCTTCTACCCGCGAGTC---AGAAGAAACAAGCTGAACATTCTATTACCGGCAAG 1061
|||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||
Sbjct 1009 AAATTTCTTCTACCCGCGAGTCAGAAGAAGAAACAAGCTGAACATTCTATCACTGGCAAG 1068
Query 1062 CGTATAGGCACAGAGGGAAGCCGAGAACACGAAGAGAAACTACTTTGGGAACTACTGAGC 1121
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CGTATAGGCACAGAGGGCAGCCGAGAACACGAAGAGAAACTACTTTGGGAACTACTGAGC 1128
Query 1122 AAAAGGAGAAAGCAACAAGAGCCAGAGAGTCCAATGGGACCTAAAGAACTCATCAGACAA 1181
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AAAAGGAGAAAGCAACTAGAGCCAGAGAGTCCAATGGGACCTAAAGAACTCATCAGACAA 1188
Query 1182 TCAGACACAAAGCAGAAGACATTGGTGTACAATCGCCGAAGGACTAGGAGCCAAGCACTG 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TCAGACACAAAGCAGAAGACATTGGTGTACAATCGCCGAAGGACTAGGAGCCAAGCACTG 1248
Query 1242 TTAAGTTCTCAAACCGCACGCCCTGATGCTTTGATCCCACTTGGTTTGTCACCGTCTGCT 1301
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1249 TTAAGTTCTCAAACCGCACGTCCTGATGCTTTGATCCCACTTGGTTTGTCACCTTCTGCT 1308
Query 1302 AGAACAGTAACCTGGAGGTAAGTAAACTAAAGCACACGTCTCACTCATTGCATCAGAATC 1361
|||||||||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||
Sbjct 1309 AGAACAGTAACCTGGAGGTAAGTAAAGTAA-GCACAAGTCTCAGTCATTGCATCAGAATC 1367
Query 1362 TATCTTCACTACGCTTTGAAAAA-CAATGAGATCCAGTAGCTTCTTT 1407
||||||||||| ||| ||||||| |||||||||||| ||||||||||
Sbjct 1368 TATCTTCACTATGCTCTGAAAAAACAATGAGATCCAATAGCTTCTTT 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52640718590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5