BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G61880.1

Length=826
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950950 jgi|Araly1|950950|scaffold_802837.1                        534    3e-151


> Ahg950950 jgi|Araly1|950950|scaffold_802837.1
Length=382

 Score =  534 bits (289),  Expect = 3e-151
 Identities = 349/378 (92%), Gaps = 4/378 (1%)
 Strand=Plus/Plus

Query  201  GGTCTGAGTAATCTCTGACAATGGCTGCAAGAGTTTTGGCAAGTGTGATTGTGATGGGCT  260
            ||||||| || |||||||| |||||||||||||||||||||||| || ||||||||  ||
Sbjct  1    GGTCTGATTATTCTCTGACGATGGCTGCAAGAGTTTTGGCAAGTTTGTTTGTGATGACCT  60

Query  261  CTGGAATCATAGCCAGGGCTTGTACTCAGGCATATCGTCAGGCGCTTGCAAATGCATCAA  320
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  61   CTGGAATCATAGCCAGGGCTTGTACTCAGGCATATCGTCAGGCGCTTGCAAATGCATCTA  120

Query  321  AAACCGGGGTTGCGCATGAAGC-GACACAGACTATTAAGAGAGGGTTGACTA-TAGGTGA  378
            |||||||||||| ||||||||| | | |||| ||||||||||||||||| || || ||||
Sbjct  121  AAACCGGGGTTGTGCATGAAGCAG-CGCAGAATATTAAGAGAGGGTTGA-TAATAAGTGA  178

Query  379  AGCAGAAGCTAGACAGATTCTTGGTGTAACTGAGAAATCATCTTGGGACGAGATTCTTAA  438
            | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  179  ACCAGAAGCTAGACAGATTCTTGGTGTAACTGAGAAATCATCTTGGGACGAGGTTCTTAA  238

Query  439  GAAATACGACACGTTGTTCGAACGCAATGCGCAGAATGGAAGCTTCTATCTCCAATCTAA  498
            ||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||| ||
Sbjct  239  GAAATACGACACGTTGTTCCAACGCAATGCGCAGAACGGAAGCTTTTATCTCCAATCAAA  298

Query  499  GGTCCATAGAGCTAAGGAATGCTTAGAGACTGCATACCAGAAGAGTACAACAACAAGCGC  558
            |||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||||| 
Sbjct  299  GGTCCATAGAGCTAAGGAATGCTTAGAGGCTGCATACCAGAAGAATTCAACAAGAAGCGT  358

Query  559  ATGAACAAGCAATAAAAC  576
            ||||| ||||||| ||||
Sbjct  359  ATGAATAAGCAATGAAAC  376



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30536456517


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5