BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61890.1
Length=913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950951 jgi|Araly1|950951|scaffold_802838.1 1027 0.0
> Ahg950951 jgi|Araly1|950951|scaffold_802838.1
Length=776
Score = 1027 bits (556), Expect = 0.0
Identities = 697/763 (91%), Gaps = 18/763 (2%)
Strand=Plus/Plus
Query 148 AGC-AAA-AGTAGATCCTCGGATGTATGGGAAGAGGCCTTTTGGAGGTGATGAATCTGAA 205
||| ||| ||| |||||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 1 AGCAAAAGAGTGGATCCTCGAATGTATGGGAAGGGGCCTTTTGGAGGCGATGAATCTGAG 60
Query 206 GAAAGGGAAGAAGATGAGAA-CTTGTTCCCGGTCTTCTCGGCCCGATCTCAACACGACAT 264
|||| |||||||||||||| ||| |||||||||||||| ||||||||||||||||||||
Sbjct 61 GAAAAAGAAGAAGATGAGAACCTT-TTCCCGGTCTTCTCCGCCCGATCTCAACACGACAT 119
Query 265 GCGTGTTATGGTCTCGGCCTTGACTCAAGTAATCGGAAACCAACAAAGCAAATCTCATGA 324
|||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 120 GCGTGTTATGGTCTCGGCCTTGACTCAAGTAATCGG---------AAGCAACTCTCATGA 170
Query 325 TAACATCAGCTCTATTGATGATAACTATCCTTCTGTGTATAATCCACAAGACCCTAATCA 384
||||| ||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 171 CAACATGAGCTCTA-T--TGATAATTATCCTTCTGTGTATAATCCACAAGACCCTAATCA 227
Query 385 ACAAGTTGCGCCTACTCATCAAGACCAAGGGGACTTGAGGAGGAGACATTATAGAGGTGT 444
||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 228 ACAAGTTGCTCCTACTCATCAAGACCAAGGGAACTTGAGGAGGAGACACTATAGAGGTGT 287
Query 445 AAGGCAAAGGCCATGGGGAAAGTGGGCAGCTGAAATCCGAGACCCAAAAAAGGCGGCACG 504
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 288 AAGGCAAAGGCCATGGGGAAAGTGGGCAGCTGAAATCCGAGATCCACAAAAGGCGGCACG 347
Query 505 TGTGTGGCTCGGGACATTTGAAACCGCTGAATCTGCGGCCTTAGCTTATGATGAAGCAGC 564
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 348 AGTGTGGCTCGGGACATTTGAAACCGCTGAATCCGCAGCCTTAGCTTATGATGAAGCAGC 407
Query 565 CCTAAAGTTCAAAGGAAGCAAAGCAAAACTCAATTT-CCCGGAGAGGGTTCAGCTTGGAA 623
|| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 408 TCTTAAGTTCAAAGGAAGCAAAGCAAAACTCAATTTTCCCG-AGAGGGTTCAGCTTGGAA 466
Query 624 GTAACTCTACATATTACTCCTCCAACCAAATTCCACAAATGGAACCACAAAGTATACCGA 683
||||||||||||||||| |||||||||||||||||||||| || ||||||| |||||| |
Sbjct 467 GTAACTCTACATATTACGCCTCCAACCAAATTCCACAAATCGAGCCACAAAATATACCAA 526
Query 684 ACTATAATCAATACTATCATGATGCGAGTAGTGGTGATATGCTAAGTTTTAATTTGGGCG 743
||||||||||||| | ||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct 527 ACTATAATCAATATTTTCAAGATGGGAGTAGTAATGATATGCTAAGTTTTAATTTGGGCG 586
Query 744 GTGGGTATGGGAGTGGTACCGGATATTCAATGTCTCATGATAATAGTACTACGACTGCTG 803
|| ||||| ||||||| |||||||| ||||| |||||| ||||||||||||||||||
Sbjct 587 GTTTATATGGTAGTGGTAGTGGATATTCCATGTCCCATGATCATAGTACTACGACTGCTG 646
Query 804 CTACAACTTCTTCGTCTTCTGGTGGCTCTTCTAGGCAACAAGAAGAGCAAGATTATGCCA 863
|||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 647 CTACAACTTCCTCGTCTTCTGGTGGCTCTTCTAGGCAACATGAAGATCAAGATTATGCCA 706
Query 864 GATTCTGGCGCTTTGGGGATTCTTCTTCCTCTCCTCATTCGGG 906
||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 707 AATTTTGGCGCTTTGGGGATTCATCTTCCTCTCCTCATTCGGG 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33853150296
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5