BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61930.1
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496364 jgi|Araly1|496364|fgenesh2_kg.8__2180__AT5G61930.2 1906 0.0
> Ahg496364 jgi|Araly1|496364|fgenesh2_kg.8__2180__AT5G61930.2
Length=1880
Score = 1906 bits (1032), Expect = 0.0
Identities = 1193/1269 (94%), Gaps = 18/1269 (1%)
Strand=Plus/Plus
Query 165 AAGAAAGCTAGTAG-AAATCTCCATCTTCGTAATCAGAAAATCTAATTTTTCATCTTCCA 223
|||||||||||| | |||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 1 AAGAAAGCTAGT-GCAAATCTCCGTCTTCGTAATCAGAAAATCTCA-TTTTCATCTTCCA 58
Query 224 TTAAATCTCTAACCAATCTCGACGTCGACGTTTCAGTTGATAATGATGAAGATCCTCTTT 283
||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 59 TTAAACCTCTAACCAATCTCGACGTCGACGTTTCAGTTGTTGATGATGACGATCCTCTTT 118
Query 284 ACGCCGACGTACCTAAACCTCCGAAGGATAAATCGGAGAGGAAACCGTATCCGACTCCGA 343
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 119 ACGCCGACGTACCCAAGCCTCGGAAGGATAAATCGGAGAGGAAACCGTATCCGACTCCGA 178
Query 344 TGAAGGAGTTGATTCGTCGTGCGAAAGAGGAGAAACAACTGAGAAAATTACAACCATGTC 403
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 179 TGAAGGAGTTGATTCGTCGTGCGAAAGAGGAGAAACAGCTGAGAAAACTACAACCATGTC 238
Query 404 GAGTTCTCGAAGATCCACCGGATAATGGTTTACTTGTGCCGGAACTTGTCGACGTGGCTC 463
| ||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 239 GGGTTCTAGAAGATCCGCCGGATAATGGTATACTTGTGCCGGAACTTGTCGACGTGGCTC 298
Query 464 ACTGTGTTCACCGATGCCGTAACAT-GTTGCTCTCTGGCCTCTCTAAAATCATTCATCAT 522
||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||
Sbjct 299 ACTGTGTTCACCGATGCCGCAAC-TCGTTACTCTCTGGCCTCTCTAAAATCATTCATCAT 357
Query 523 GTTCCTGTTCATCGTTGCAGATTGTGCGCTGAGGTTCATATTGGCAAGCAAGGTCATGAA 582
|||||||||||||| |||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 358 GTTCCTGTTCATCGCTGCAGATTGTGCTCTGAGGTTCACATTGGCAAGGAAGGTCATGAA 417
Query 583 ATCAGGACTTGCACTGGTCCCGGGAGTGGTTCAAGAAGTGCGACTCATGTTTGGAAAAGA 642
|||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||
Sbjct 418 ATCAGGACTTGCACAGGGCCGGGGAGCGGTTCAAGAAGTGCGACTCATGTTTGGAAAAGA 477
Query 643 GGAAGAGTGAGTGATGTTGTGTTGTTCCCAAAATGTTTTCACCTCTATGACCGTGCTGTG 702
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GGAAGAGCGAGTGATGTTGTGTTGTTCCCAAAATGTTTTCACCTCTATGACCGTGCTGTT 537
Query 703 AAACCGAGAGTTATACATGATGAGAGATTTACTGTCCCTAAAATCTCTGCGGTTCTTGAG 762
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 538 AAACCGAGAGTTATACATGACGAGAGATTTACCGTCCCTAAAATCTCTGCGGTTCTTGAG 597
Query 763 CTATGCATACAGGCTGGTGTAGACCTCGAGAAATTCCCATCCAAGCGAAGATCGAAACCT 822
||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 598 CTATGCATACAGGCTGGCGTAGACCTTGAGAAGTTCCCATCAAAGCGAAGATCGAAACCT 657
Query 823 GTGTACAGCATCGAAGGACGGATTGTGGATTTTGAGGACGTCAAC-GATGGAAATTCAG- 880
|||||||||||||||||||||||||| ||||||||||| |||||| | || ||||||||
Sbjct 658 GTGTACAGCATCGAAGGACGGATTGTAGATTTTGAGGAAGTCAACTG-TGAAAATTCAGA 716
Query 881 AATTGGCAGTTACTTCTACTACTACACTTATACAAGAAGATGATCGTTGCAAGG-A-AG- 937
|||| |||||||||||||||||||||||| |||||||||| ||| ||||||||| | ||
Sbjct 717 AATT-GCAGTTACTTCTACTACTACACTTTTACAAGAAGACGATTGTTGCAAGGAAGAGA 775
Query 938 AGAAGAAGAGCTTGAAGGAATTAAGCTTCGAGACGATGGAGTCATGGTTTGAAATGGTTT 997
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 776 AGAAGAAGAGCTTGAAGGAATTAAGCATCGAGACGATGGAGTCATGGTTTGAAATGGTTT 835
Query 998 TAGGGGTCAGGAAACTGATGGAGAGATACAGAGTGTGGACTTGTGGGTATTGTCCAGAGA 1057
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 836 CAGGGGTCAGGAAACTGATGGAGAGATACAAAGTGTGGACTTGTGGGTATTGTCCTGAGA 895
Query 1058 TTCAGGTGGGTCCAAAGGGACACAAAGTAAGGATGTGTAAAGCCACAAAGCATCAGATGC 1117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTCAGGTGGGTCCAAAGGGACACAAAGTAAGGATGTGTAAAGCCACAAAGCATCAGATGC 955
Query 1118 GAGACGGAATGCATGCCTGGCAAGAAGCGACTATTGATGATGTGGTCGGTCCAACCTATG 1177
||||||||||||| || |||||||| |||||||||||||||||||||||||||| |||||
Sbjct 956 GAGACGGAATGCACGCGTGGCAAGAGGCGACTATTGATGATGTGGTCGGTCCAAACTATG 1015
Query 1178 TGTGGCATGTTCGGGATCCTACTGATGGTTCTGTTCTTGATAATAGCTTGAAGAGGTTTT 1237
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1016 TATGGCATGTTCGGGATCCTACTGATGGTTCTGTTCTTGATAATAGCTTGAAGAGATTTT 1075
Query 1238 ACGGGAAGGCTCCTGCGGTTATAGAGATGTGTGTGCAAGGTGGTGCACCGGTACCTGATC 1297
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1076 ACGGGAAGGCTCCTGCGGTTGTAGAGATGTGTGTGCAAGGTGGTGCACCGATACCTGATC 1135
Query 1298 AGTACAACAGTATGATGAGGCTCGATGTAGTTTACCCTCAACGCGATGAGGTCGATCTAG 1357
||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1136 AGTACAAGAGTATGATGAGGCTCGATGTGGTTTACCCTCAACGCGATGAGGTTGATCTAG 1195
Query 1358 TCGCTTGACCTCTTTAAGTATTCAGCATTGCTTAATGATTTAGTATGGACACAGTGAAAT 1417
|||||||||||||||||||| ||||||||| || | | ||||||| |||| ||||||
Sbjct 1196 TCGCTTGACCTCTTTAAGTAGTCAGCATTG-TT--T--TC-AGTATGGTCACATTGAAAT 1249
Query 1418 ACTCCCCTG 1426
|||||||||
Sbjct 1250 ACTCCCCTG 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56906826030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5