BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61970.1
Length=2265
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496370 jgi|Araly1|496370|fgenesh2_kg.8__2186__AT5G61970.1 3446 0.0
> Ahg496370 jgi|Araly1|496370|fgenesh2_kg.8__2186__AT5G61970.1
Length=2216
Score = 3446 bits (1866), Expect = 0.0
Identities = 2104/2214 (95%), Gaps = 36/2214 (2%)
Strand=Plus/Plus
Query 50 ACTCCTTGCTTGAGATTCAATCGAAAACTGAAATTCGCAAGCCTCCACTGCTCGCCGTCG 109
||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 18 ACTACTTGCTTGAGATTCAATCGAAAACTGAAATTCGCACGCCTCCGCTGCTCGCCGTCG 77
Query 110 CACTCATCGGAATATTCCATTGGCACCGTACTACCCTGAAATCATCTCATCAGATCAAAA 169
| | ||||||||||||||||||||| | | ||| ||||||||||||||||||||||||
Sbjct 78 CCCACATCGGAATATTCCATTGGCA-C--A--ACCGTGAAATCATCTCATCAGATCAAAA 132
Query 170 CGGGAG-TTTAACTAGAATTGCGTGGATTAATGGGGAAGAAGCAGAGCGAGATATCTGCA 228
|||| | |||||||||||||| |||||||||||||||||||| |||||||| | ||||||
Sbjct 133 CGGG-GTTTTAACTAGAATTGTGTGGATTAATGGGGAAGAAGGAGAGCGAGTTGTCTGCA 191
Query 229 ATGGAGATCGACGATCCGAAATCTGAAAGCTCGGATCAGATCCTTCCAAGGTTCTCGATC 288
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 192 ATGGAGATCGACGATCCGAAATCTGAAAGCTCTGATCAGATCCTTCCGAGGTTCTCGATC 251
Query 289 AATGTTCTGCAGCTGATGAAATCTTCTCAGGCGCAACATGGTCTGCGTCATGGTGACTAT 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AATGTTCTGCAGCTGATGAAATCTTCTCAGGCGCAACATGGTCTGCGTCATGGTGACTAT 311
Query 349 GCTCGCTATCGGAGGTATTGCTCCGCACGTTTGAGGAGGTTATACAAGTCCTTGAAATTC 408
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 312 GCTCGCTATCGGAGGTATTGCTCAGCACGTTTGAGGAGGTTATACAAGTCCTTGAAATTC 371
Query 409 ACTCATGGCCGTGGAAAATACACTCGACGAGCCATTCTTGAATCAACTGTCACTGATGTT 468
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 ACTCATGGCCGTGGTAAATACACTCGACGAGCCATTCTTGAATCAACTGTCACTGATGTT 431
Query 469 AGGTTCCTTCATGTGGTTTTCTATATGGCGGAAAGAGCATGGAGCCATGCAATGGAAAAA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 AGGTTCCTTCATGTGGTTTTCTATATGGCGGAAAGAGCATGGAGCCATGCAATGGAAAAA 491
Query 529 AGACAGCTACCAGATGGGCCTAATGCACGGCAGCGGATATATTTGGTTGGTAGGCTGAGG 588
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 492 AGACAGTTACCAGATGGGCCTAATGCACGGCAGCGGATATATTTGGTTGGTAGGCTAAGG 551
Query 589 AAGGCAGTTAAATGGGCTTCCCTTTTCTCAAGTTTGTGCTCTATTAAGACAGATTCCAGG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 AAGGCAGTTAAATGGGCTTCCCTTTTCTCAAGTTTGTGCTCTATTAAGACAGATTCCAGG 611
Query 649 ACATCTCTGGAAGCTGAGGCATATGCATCCTATATGAAAGGTACTCTGTTGTTTGAGCAA 708
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 ACATCACTGGAAGCTGAGGCATATGCATCCTATATGAAAGGTACTCTGTTGTTTGAGCAA 671
Query 709 GATCAAAATTGGGAAACTGGGTTGGCATGTTTCAAAAACGCCAGAGCTGTTTATGAGGAA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 GATCAAAATTGGGAAACTGGGTTGGCATGTTTCAAAAACGCCAGAGCTGTTTATGAGGAA 731
Query 769 CTTGGGAAATATGGAGATCTAGAGAACCAAGTTCTTTGCCGAGAACGGGTTGAGGAGCTT 828
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 732 CTTGGGAAATATGGAGATCTAGAAAACCAAGTTCTTTGCCGGGAACGGGTTGAGGAGCTT 791
Query 829 GAGCCTAGTATTCGATACTGCCTACACAAAATTGGCAAGTCAAACTTGCAGACATCTGAA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 GAGCCTAGTATTCGATACTGCCTACACAAAATTGGCAAGTCAAACTTGCAGACATCTGAA 851
Query 889 CTTCTTCAGATTGGTGAGATGGAAGGCCCTGCATTGGATCTTTTCAAAGCAAAAATAGAG 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CTTCTTCAGATTGGTGAGATGGAAGGCCCTGCATTGGATCTTTTCAAAGCAAAAATAGAG 911
Query 949 GCTGCTATGGAAGAGGCCAGGTCTCAACAAGCTGCATCTCTTACAGAGTTTAGTTGGCTT 1008
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct 912 GCTGCTATGGAAGAGGCTAGATCTCAACAAGCTGCATCTCTTACAGAGTTTAATTGGCTT 971
Query 1009 GGCTACAGATTTCCAGTTTCGAATCCAAAATCTCGGGTTTCTATTTTAAAAGCTCAGGAA 1068
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 972 GGCTACAGATTTCCGGTTTCGAACCCAAAATCTCGGGTTTCTATTTTAAAAGCCCAGGAA 1031
Query 1069 CTTGAGAAGGAACTACAGAGTCCAACAGCAGAATCTCTCCCTGCAGAGAAAAAGCTAACC 1128
||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1032 CTTGAGAAGGAGCTACAGGGTCCGACAGCAGAATCTCTCCCTGCAGAGAAAAAGCTAACC 1091
Query 1129 ATTTTTGATAAATTATTCACTGCATATCATGATGCCAGGAACACGATACGCAGTGACTTG 1188
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1092 ATCTTTGATAAATTATTCACTGCATATCATGATGCCAGGAACACCATACGCAGTGACTTG 1151
Query 1189 GTAAGTGCAGGTAATGCTGAATCTGTTAAAGATGACCTAAATGGTTTGGACAAAGCTGTT 1248
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 GTAAGTGCAGGAAATGCTGAATCTGTTAAAGATGACCTAAATGGTTTGGACAAAGCTGTT 1211
Query 1249 GGAGCTGTGCTAGGACAAAGAACCATTGAAAGGAACCAGTTGCTGGTTAAAGTAGCAAAG 1308
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 1212 GGAGCTGTGCTAGGACAAAGAACCATTGAACGGAACCAGTTGTTGGTTAAAATAGCAAAG 1271
Query 1309 AGTAAACTGAACAGGAAACGTGATGATAAAAATGATAAAG-TTACTAGGCCTGAAGAGCT 1367
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 1272 AGTAAACTGAACAGGAAACGTGATGATAAAAGTGA-AAAGGTTACTAGGCCTGAAGAGCT 1330
Query 1368 TGTTCGATTGTATGACCTTCTATTACAGAATGTCGCTGATCTTTCTGATCTCATTAGCTC 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 TGTTCGATTGTATGACCTTCTATTACAGAATGTCGCTGATCTTTCTGATCTCATTAGCTC 1390
Query 1428 TGGAAGAGACAGGAAACCTGAAGAGATTGCCTTTGAAGAAGAGTGTCAGCGCACAAGCTT 1487
|||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1391 TGGAAGAGACAGAAAACCTGAAGAGATTGCCTTTGAAGAAGAGTGTCAGCACAAAAGCTT 1450
Query 1488 GGCCTTCCGTGCTGAAAGGTGCTTCTACTTGGCAAAGTCATATAGTCTAGCTGGAAAGAG 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 GGCCTTCCGTGCTGAAAGGTGCTTCTACTTGGCAAAGTCATATAGTCTAGCTGGAAAGAG 1510
Query 1548 GGCTGAAGCATTCGCCCTGTATTCTCGTGCTCGATCTCTAGCTGAAGATGCCCTGAACAA 1607
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1511 GGCTGAAGCATTCGCCCTGTATTCTCGTGCTCGATCTCTTGCTGAAGATGCCCTGGACAA 1570
Query 1608 GTTTCAAAGCATAGCAAAGAAAGATGAGGGAACAATCCAGGAACTGAAGACACTGATCAA 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1571 GTTTCAAAGCATAGCAAAGAAAGATGAGGGAACAATCCAGGAACTGAAGACACTGATTAA 1630
Query 1668 AGAATGCAGAGCTAACAGCTGCATAGAGCATGCGACCGGGATTATGGAGGAAGAGAGGGC 1727
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 AGAATGCAGAGCTAATAGCTGCATAGAGCATGCGACCGGGATTATGGAGGAAGAGAGGGT 1690
Query 1728 TCCAGAGAATCTGTCGAATAGAATGTCAACTATATCACTAAACAATACAGCTGCGCAGGT 1787
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1691 TCCAGAGAATCTGTCGAATAGAATTTCAACTATATCACTAAACGATACAGCTGCGCAGGT 1750
Query 1788 GGAGGAGAAGTACCTGTTAGACAAACTGGATGTGTATGAATCTGCGGTTGGGGATTCAAA 1847
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1751 GGAGGAGAAGTACCTGTTAGACAAACTGGATGTGTATGAATCTGCGGTTGGCGATTCAAA 1810
Query 1848 CACGAAAACAGCCCCAAAGATTGAACGGTTCCCACCGGCATTACAATCTATACCGCGTAA 1907
||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1811 CACGAAAACCGCCCCAAAGATTGAACGGTTCCCACCGGCATTCCAATCAATACCGCGTAA 1870
Query 1908 TCCGATTGTTCTAGACCTTGCCTACAACTGCATCGACTTCCCAGTTATTGAAAACAGGAT 1967
||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 1871 TCCGATTGTTCTAGACCTTGCCTACCATTGCATCGACTTCCCAGATATTGAAAACAGGAT 1930
Query 1968 GAAGAAAAAAGGAGGCTTCTTTA-GTAGCCGAATTTCTTCTCTCTGGTA-AAAG-C-T-- 2021
||||||||||||||| ||| | | ||||| ||| | |||| || | |||| | |
Sbjct 1931 GAAGAAAAAAGGAGGAGGCTTCATG-AGCCGTATTAAT-CTCTGGGGGACAAAGTCCTAA 1988
Query 2022 ----TT-AAACCGGCTTTCTCTCTAAGGTTAAAAAAGGATCTCGGATTCATTCTCCCTTT 2076
|| |||||||||||||||||||||||||||||| |||||||||||| |||||| ||
Sbjct 1989 AAACTTTAAACCGGCTTTCTCTCTAAGGTTAAAAAAGAATCTCGGATTCAATCTCCCCTT 2048
Query 2077 TTATTTACCAGACTCAGAAACTTGTTGTTGCTCTTTCGTAGCTTCTGAAACGAAATGCAT 2136
|| || ||||||||| ||||||||||| | || ||| |||||||| |||||||||||||
Sbjct 2049 TT-TT-ACCAGACTCTGAAACTTGTTGCT-CTTTTT--TAGCTTCTAAAACGAAATGCAT 2103
Query 2137 GAGATTTCTGTTAAATTTATTTTGTC-A-----CA--GAATCACAATTTAGACATTTTGT 2188
||||||||||||| ||||||||||| | || |||||||||||||||||||||||
Sbjct 2104 AAGATTTCTGTTAA-TTTATTTTGTCGATTTATCACAGAATCACAATTTAGACATTTTGT 2162
Query 2189 TCTTCCATTTTAGTGACACTTGGAATTTTGGAAATAGAGACCAGTTTTATTGGT 2242
|||||||||||||||||||||| ||||||||||||| |||||| ||||| ||||
Sbjct 2163 TCTTCCATTTTAGTGACACTTGAAATTTTGGAAATATAGACCAATTTTAATGGT 2216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85284058555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5