BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G61997.1
Length=120
Score E
Sequences producing significant alignments: (Bits) Value
Ahg951923 jgi|Araly1|951923|scaffold_25500001.1 217 2e-56
Ahg950962 jgi|Araly1|950962|scaffold_802849.1 217 2e-56
> Ahg951923 jgi|Araly1|951923|scaffold_25500001.1
Length=208
Score = 217 bits (117), Expect = 2e-56
Identities = 119/120 (99%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAGAGGAAATTCACGTGTTGGTAACGCACTTGCTAAGAGGTGTGGGACCCAAGAG 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 ATGGGGAGAGAAAATTCACGTGTTGGTAACGCACTTGCTAAGAGGTGTGGGACCCAAGAG 128
Query 61 TACTGTGTAGCATTTGTGTGTGGTCTAAAAGCAACCATTGTAGGAATCTTTGTCCGTTAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TACTGTGTAGCATTTGTGTGTGGTCTAAAAGCAACCATTGTAGGAATCTTTGTCCGTTAA 188
> Ahg950962 jgi|Araly1|950962|scaffold_802849.1
Length=208
Score = 217 bits (117), Expect = 2e-56
Identities = 119/120 (99%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 1 ATGGGGAGAGGAAATTCACGTGTTGGTAACGCACTTGCTAAGAGGTGTGGGACCCAAGAG 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 ATGGGGAGAGAAAATTCACGTGTTGGTAACGCACTTGCTAAGAGGTGTGGGACCCAAGAG 128
Query 61 TACTGTGTAGCATTTGTGTGTGGTCTAAAAGCAACCATTGTAGGAATCTTTGTCCGTTAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 TACTGTGTAGCATTTGTGTGTGGTCTAAAAGCAACCATTGTAGGAATCTTTGTCCGTTAA 188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 3745651434
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5