BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62020.1
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950964 jgi|Araly1|950964|scaffold_802851.1 1182 0.0
Ahg943031 jgi|Araly1|943031|scaffold_603575.1 165 8e-40
> Ahg950964 jgi|Araly1|950964|scaffold_802851.1
Length=942
Score = 1182 bits (640), Expect = 0.0
Identities = 860/958 (90%), Gaps = 48/958 (5%)
Strand=Plus/Plus
Query 107 CTTACGCTTAAAATCCTATGAATTCGCCGCCGGTTGACGCAATGATTACCGGAGAATCAT 166
|||||| ||||||| |||||| |||||||||||| ||||||||| |||||||||||||||
Sbjct 4 CTTACGATTAAAATTCTATGACTTCGCCGCCGGTGGACGCAATGGTTACCGGAGAATCAT 63
Query 167 CGTCACAAAGATCTATCCCAACGCCGTTTCTCACAAAAACGTTTAACCTCGTTGAAGATA 226
| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 64 CATCTCAAAGATCTATCCCGACGCCGTTTCTCACAAAAACGTATAACCTCGTTGAAGATA 123
Query 227 GTTCCATCGACGATGTTATCTCATGGAACGAAGATGGTTCCTCTTTCATCGTATGGAATC 286
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 124 GTTCCATCGACGATGTTATCTCATGGAACGAAGATGGTTCTTCTTTCATCGTATGGAATC 183
Query 287 CGACAGATTTCGCTAAAGATTTGCTTCCTAAACACTTCAAACACAACAATTTCTCTAGTT 346
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 184 CAACAGATTTCGCTAAAGATTTGCTTCCTAAACACTTCAAACACAACAATTTCTCTAGCT 243
Query 347 TCGTTCGTCAGCTCAACACTTACGGATTCAAAAAAGTTGTACCGGATCGATGGGAGTTTT 406
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 244 TCGTTCGTCAGCTCAACACTTACGGATTCAAAAAAGTAGTACCGGATCGATGGGAGTTTT 303
Query 407 CAAACGATTTCTTTAAGAGAGGAGAAAAACGTCTTCTCCGTGAGATCCAACGTCGGAAAA 466
| || |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 304 CGAATGATTTCTTCAAGAGAGGAGAGAAACGGCTTCTCCGTGAGATCCAACGTCGGAAAA 363
Query 467 TAACAACGACGCATCAAACAGTTGTTGCTCCTTCGTCGGAACA-ACGAAACCAGACGATG 525
||||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||||
Sbjct 364 TAACAACGACGCATCAAACAGTTGTTGCTCCGTCGTCGGAACAGA-GAATCCAGACGATG 422
Query 526 GTTGTATCACCGTCAAATTCCGGGGAAGATAATAATAA---TAATCAGGTGA-TG-TC-- 578
|||||||||||||||||||| ||||| ||||||||||| |||| | ||| | ||
Sbjct 423 GTTGTATCACCGTCAAATTCAGGGGAGGATAATAATAACAATAATAATATGAATAATCAG 482
Query 579 -T--T--CGTCTCCGTCGTCGTGGTATTGTCATCAAACGAAGACGACTGGGAATGGTGGT 633
| | | ||||||||||||||||| ||||| || ||| || ||||||||||||
Sbjct 483 GTGATGTCTTCTCCGTCGTCGTGGTACTGTCA--AA-CGA---CG---GGGAATGGTGGT 533
Query 634 TTATCAGTGGAGTTATTGGAAGAGAACGAGAAGCTTCGGAGTCAAAACATTCAGCTAAAC 693
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 534 TTATCAGTTGAGTTATTGGAAGAGAACGAGAAGCTTCGGAGTCAAAACATTCAGCTTAAC 593
Query 694 CGTGAGCTTACTCAGATGAAATCTATCTGCGATAATATCTATAGTCTCATGTCGAATTAC 753
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 594 CGTGAGCTTACTCAGATGAAATCTATCTGCGATAATATCTTTAGTCTCATGTCGAATTAC 653
Query 754 GTCGGATCTCAGCCCACTGATCGGAGTTATTCTCCCGGAGGTAGTAGTAGTCAACCGATG 813
|||||||||||| ||||||||| |||||||||||| ||||| ||||| ||||||||| ||
Sbjct 654 GTCGGATCTCAGGCCACTGATCAGAGTTATTCTCCGGGAGGCAGTAGCAGTCAACCGGTG 713
Query 814 GAGTTTTTACCGGCGAAGCGGTTTTCGGAGATGGAGATTGAAGAAGAAGAAGAAGCGAGT 873
||||||||||||| |||||||||||| ||||||||| |||| | ||||||| |||||
Sbjct 714 GAGTTTTTACCGGTGAAGCGGTTTTCAGAGATGGAGGTTGA-G--GAAGAAG---CGAGT 767
Query 874 CCGAGGTTGTTTGGTGTTCCGATTGGGT-TAAAACGGACGAGAAGTGAAGGTGTTCAGGT 932
|||||| |||||||||||||||| || | |||||||||||||||||||||| ||||||||
Sbjct 768 CCGAGGCTGTTTGGTGTTCCGATAGG-TCTAAAACGGACGAGAAGTGAAGGAGTTCAGGT 826
Query 933 GAAGACG------ACGGCGGTGGT--TGGG-GAAAATTCCGATGAGGAGACGCCGTGGTT 983
||||||| ||||||| ||| |||| ||||||||||||||| | | ||
Sbjct 827 GAAGACGGTTTCTACGGCGGCGGTGGTGGGAGAAAATTCCGATGAGT-G--GT--TGAC- 880
Query 984 GAGACATTATAATCGAACCAATCAGAGAGTTTGTAATTAAAAACGAACGGTTTAGATT 1041
|||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 881 GAGACATTGTAATCGAACCAATCAGAGAGTTTGTAATTAAA--CGAACGGCTTAGATT 936
> Ahg943031 jgi|Araly1|943031|scaffold_603575.1
Length=1179
Score = 165 bits (89), Expect = 8e-40
Identities = 226/290 (78%), Gaps = 18/290 (6%)
Strand=Plus/Plus
Query 187 ACGCCGTTTCTCACAAAAACGTTTAACCTCGTTGAAGAT--AGTTCCATCGACG-ATGTT 243
||||||||| | || ||||||| | | || || |||||| ||| | ||||| || |
Sbjct 196 ACGCCGTTTTTGACGAAAACGTATCAGCTTGTGGAAGATCCGGTT-TA-CGACGAAT-TG 252
Query 244 ATCTCATGGAACGAAGATGGTTCCTCTTTCATCGTATGG-AATCCGA-CAGATTTCGCTA 301
|| || |||||||||||||| | |||| || || ||| | || | | || ||||| |
Sbjct 253 ATATCGTGGAACGAAGATGGAACAACTTTTATTGTGTGGCGA-CC-AGCTGAATTCGCCA 310
Query 302 AAGAT-TTGCTTCCTAAACACTTCAAACACAACAATTTCTCTAGTTTCGTTCGTCAGCTC 360
|||| || ||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 311 GAGATCTT-CTTCCCAAATACTTCAAACACAACAATTTCTCTAGTTTTGTTCGTCAGCTC 369
Query 361 AACACTTACGGATT-CAAAAAAGTTGTACCGGATCGATGGGAGTTTTCAAACGATT-TCT 418
|| ||||||||||| | |||| || || || ||||| ||||||||||| || || | | |
Sbjct 370 AATACTTACGGATTTCGAAAA-GTAGTTCCAGATCGTTGGGAGTTTTCTAATGACTGT-T 427
Query 419 TTAAGAGAGGAGAAAA-ACGTCTTCTCCGTGAGATCCAACGTCGGAAAAT 467
|||||||||| || || | ||| || || || || ||||| ||||||||
Sbjct 428 TTAAGAGAGGTGAGAAGAT-TCTGCTTCGGGATATTCAACGGCGGAAAAT 476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55078494270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5