BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62030.1
Length=2197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496377 jgi|Araly1|496377|fgenesh2_kg.8__2193__AT5G62030.1 2627 0.0
> Ahg496377 jgi|Araly1|496377|fgenesh2_kg.8__2193__AT5G62030.1
Length=2057
Score = 2627 bits (1422), Expect = 0.0
Identities = 1785/1950 (92%), Gaps = 66/1950 (3%)
Strand=Plus/Plus
Query 157 ATCCGGTTAGATTATACAATAAAATTGATT--GGCTTATAACACCGGTTAGACCTTAAAC 214
|||||||||||||||| |||||||| |||| || || |||||||||||||||| |||||
Sbjct 93 ATCCGGTTAGATTATAAAATAAAATGGATTGGGGTTTGTAACACCGGTTAGACCCTAAAC 152
Query 215 CCTTTCGTGAC-TTATTAGTTGGTCTCTGCGCCGCGTTCTCTTCTCTATCGATTAAGCAA 273
||||||||||| |||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct 153 CCTTTCGTGACTTTATTA-TCGTTCTCTGCGCCGCGTTCTCTTCTCTATCGATTAAGCAA 211
Query 274 AATCGACCCTCTTCGAttttttttttCCATCTCTGAGC-A-AAA-TATCGTGCTTTCATC 330
||||||||||||||||||||| |||| ||||||||||| | ||| | | | | ||| |
Sbjct 212 AATCGACCCTCTTCGATTTTTATTTT-CATCTCTGAGCAATAAATTTTGGGGATTT--TT 268
Query 331 ATCTT-CGTC-TGCTTCTTCTTCTTCCAAGGCCAAAGTATGGAGCTTTCTGATCCAAACA 388
| || | || | | |||| | || | ||||||||||||||| |||||||||| |||||
Sbjct 269 TTTTTGCATCTTTC-TCTT-ATGTTTC-AGGCCAAAGTATGGAACTTTCTGATCTAAACA 325
Query 389 ATGGCAAGACCAACAAACCAAAGCAACCTCCAAAACGTTTCATCAAGAACCAAATCCCTG 448
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 ATGGGAAGACCAACAAACCAAAGCAACCTCCAAAACGTTTCATCAAGAACCAAATCCCTG 385
Query 449 ATTCAATCCTCGGTGATGCATCCCTCAACGCTGCTATCTCCAT-CTTACCTTCAATTTAC 507
| |||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 386 AATCAATCCTTGGTGATGCATCCCTCAACGCTGCTATCTCAATCCTT-CCTTCAATTTAC 444
Query 508 CATTTTGAAGTCCATAAATGTGTGTGGCGTATCAAAACATCAAACGCTAAACGCATAGCT 567
|| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 445 CAGTTTGAGGTCCATAAATGTGTTTGGCGTATCAAATCATCAAACGCTAAACGCATAGCT 504
Query 568 CTGCAGCTTCCAGAGGGTCTTCTTATGTACGCTCTTACACTCTCTGATATCTTCACATCT 627
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 505 CTGCAGCTTCCAGAGGGTCTTCTTATGTATGCTCTCACACTCTCTGACATCTTCACATCT 564
Query 628 TTTGCTGGAGCTTCTCACTGTTTTGTACTCGGTGATGTTACTTATGGAGCTTGTTGTGTT 687
||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 565 TTTGCTGGAGCCACTCACTGTTTTGTCCTCGGTGATGTTACTTATGGAGCTTGCTGTGTT 624
Query 688 GATGATTTCTCTGCTTGTGCGCTTGGTGCTGACTTGCTTATTCACTATGGACATAGTTGT 747
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 625 GATGATTTCTCTGCCTGTGCTCTTGGTGCTGACTTGCTTATTCACTATGGACATAGTTGT 684
Query 748 CTTGTCCCTATCGACTCTACAAAAATCCCTTGCCTTTATGTTTTTGTTGAGATCCAGATA 807
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 685 CTTGTCCCTATTGACTCTACAAAAATCCCTTGCCTTTATGTCTTTGTTGAGATTCAGATT 744
Query 808 GATGTCAAATGCT-TGTTGAACACTATACATC-TGAATCTCGCGAGTGATGTTAAGAACA 865
||||||||||| | ||||||||||||| || | |||||||||||||||||| |||||||
Sbjct 745 GATGTCAAATG-TCTGTTGAACACTATCCA-CATGAATCTCGCGAGTGATGCCAAGAACA 802
Query 866 TCATTCTTGCAGGCACGATTCAGTTCACTTCGGCGATTAGAGCTGTGAAACCAGAGTTGG 925
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 803 TCATTCTCGCAGGCACGATTCAGTTTACTTCGGCGATTAGAGCTGTGAAACCAGAGTTAG 862
Query 926 AGAAGCAAGGGTTCAATGTTTTGATCCCTCAGTCAAAGCCTCTATCTGCTGGTGAAGTCC 985
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 863 AGAAGCAAGGGTTCAATGTTTTGATCCCTCAGTCAAAGCCTCTTTCGGCTGGTGAAGTCC 922
Query 986 TTGGCTGTACAGCTCCCAAGGTGAAGACGGTTGAGGATTGTAAAGACCAAGTACTGGTCT 1045
|||| ||||||||||| ||| | ||||||||||| ||||||||||||||||||||||| |
Sbjct 923 TTGGATGTACAGCTCCTAAGATTAAGACGGTTGACGATTGTAAAGACCAAGTACTGGTGT 982
Query 1046 TTGTAGCTGATGGGAGATTTCATCTAGAAGCATTCATGATAGCCAATCCAAAAATCAAGG 1105
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 983 TTGTAGCTGACGGGAGATTTCATCTAGAAGCATTCATGATTGCCAATCCGAAAATCAAGG 1042
Query 1106 CGTTTAGGTATGATCCATATCTTGGCAAGCTGTTTTTAGAGGAGTATGATCATAAGGGAA 1165
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1043 CGTTTAGGTATGATCCATATCTTGGCAAGCTGTTTTTAGAGGAGTATGATCACAAGGGAA 1102
Query 1166 TGAGGGAGACGAGAATGAGAGCGATTGCACGGGCCAGGGAGGCTAAAACTTGGGGGATCG 1225
||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1103 TGAGGGAGACGAGAAGGAGAGCGATTGCAAGGGCCAGGGATGCTAAAACTTGGGGGATCG 1162
Query 1226 TGTTGGGGACATTGGGAAGGCAAGGAAATCCTAAGATTCTTGAGAGATTAGAGAAGAAAA 1285
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1163 TGTTGGGGACATTGGGAAGGCAAGGAAATCCTAAGATTCTCGAGAGATTAGAGAAGAAAA 1222
Query 1286 TGATGGAGAAAGGGATAGATAGCACAGTTGTTTTAATGTCGGAACTTAGTCCCACTAGAG 1345
|| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1223 TGGTGGAGAAAGGGATAGATAGCACGGTTGTTTTAATGTCGGAACTTAGCCCCACTAGAG 1282
Query 1346 TGGCATTGTTTGAAGACTCGGTGGATGCTTGGGTCCAAATAGCATGCCCAAGACTTTCTA 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 TGGCATTGTTTGAAGACTCGGTGGATGCTTGGGTCCAAATAGCATGCCCAAGACTTTCTA 1342
Query 1406 TTGATTGGGGTGAAGCGTTTCTTAAGCCGCTTCTGACGACTTTTGAGGCTGAGATTGCTC 1465
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1343 TTGATTGGGGTGAAGCGTTTCTTAAGCCGCTTCTGACAACTTTTGAGGCTGAGATTGCTC 1402
Query 1466 TAGGATTCATCCGCGGCTGGTGGGAGAATGATTCTTCTAGTAGAGTAAATTCTTCATCTG 1525
|||||||||||||||| ||||||||||||| |||||| ||||||||| ||||||| ||||
Sbjct 1403 TAGGATTCATCCGCGGTTGGTGGGAGAATGGTTCTTCGAGTAGAGTAGATTCTTCGTCTG 1462
Query 1526 GCTGTTGCAAAGAGGACAAAGAAACAAGCTGTGCGTGTAAAAATGAGAACGTGAAAGATG 1585
|||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 1463 GCTGTTGCAAAGAGGACAAAGAAACAAGCTGTGCGTGTAAAAATGAAAAGGTGGAAGATG 1522
Query 1586 ACAAGAAAGACAATGATGGGGCACTCGATGGAGACTATCCAATGGATTACTATGCACAAG 1645
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1523 ATAAGAAAGACAATGATGGGGCACTCGATGGAGACTATCCAATGGATTATTATGCACAAG 1582
Query 1646 AAGGTGGAGAATGGAACTCTTCATATCTCAAGAAGTCATCTCGTCCCATTCGAAGAAACC 1705
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1583 AAGGCGGAGAATGGAACTCTTCATATCTCAAGAAGTCGTCTCGCCCCATTCGAAGAAACC 1642
Query 1706 CTTTACCTTCTTCTGTAGTTTAGAATGCTGACAGAGTAAATTCAACCACAGCAGGTATTA 1765
|||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 1643 CTTTACCTTCTTCTGTAGTTTAGAATGCTGACAGAGTAAATT-A-----------T-T-A 1688
Query 1766 CCAAGTCAAAAAGGCAAATGGGTTTTGATGATGTTCCTGGTATTTTCGGATG-G-GTTGA 1823
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1689 CCAAGTCAAAAAGGCAAATGGGTTTTGATGATGTTCCTGGTATTTTCGGATATGTGTTGA 1748
Query 1824 TTTGCTTGTATCGTAATCTTCATGCTGAAGAATGTTA----CTTGGGGAGGTCTTGAAGC 1879
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1749 TTTGCTTGTATCGTAATCTTGATGCTGAAGAATGTTAGTTACTTGGGGAGGTCTTGAAGT 1808
Query 1880 GAAACCTTAGACTATTACGAGAGTTTGACATAACATGAAGA-TTGGAAGAGTGAAGACTC 1938
|||||| ||| ||| | || || ||||||||| ||| ||||| ||||||||
Sbjct 1809 GAAACCG-AGA--ATT--G-GA------CAGAACATGAAGGCTTG-AAGAGGGAAGACTC 1855
Query 1939 CTGGTCTGTTTTGATACAAAGCGGTGAGGATTAAA-CG-CTGTTTGCAGAGAAGCTACTA 1996
|| || |||||||||||| ||||||||||||||| || ||||||||||||||||||| |
Sbjct 1856 ATGCTCAGTTTTGATACAA-GCGGTGAGGATTAAAACGGCTGTTTGCAGAGAAGCTACAA 1914
Query 1997 CACTTGTTTATTTTTGTCTTCTCATTACTTGTTTTG-ATGGGTTACAACAAAATGGTGAT 2055
|||||||||| |||||||||||| | | || | | | | || ||||||| ||||||||
Sbjct 1915 CACTTGTTTACTTTTGTCTTCTC-T-A-TT-TATGGGA-GG-TTACAACGGAATGGTGAG 1968
Query 2056 TGAAGTGAAAA-CAGAGCCCTGTTTATGTG 2084
||||||||||| ||||||||||||||||||
Sbjct 1969 TGAAGTGAAAAACAGAGCCCTGTTTATGTG 1998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82693921895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5