BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62040.1 Length=534 Score E Sequences producing significant alignments: (Bits) Value Ahg332437 jgi|Araly1|332437|fgenesh1_pm.C_scaffold_8001780 876 0.0 > Ahg332437 jgi|Araly1|332437|fgenesh1_pm.C_scaffold_8001780 Length=534 Score = 876 bits (474), Expect = 0.0 Identities = 514/534 (96%), Gaps = 0/534 (0%) Strand=Plus/Plus Query 1 ATGTCAAGAGAAATAGAGCCACTAATAGTGGGAAGAGTGATAGGAGATGTACTCGAAATG 60 ||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||| Sbjct 1 ATGTCAAGAGAAATAGAACCACTAATAGTAGGAAGAGTGGTAGGAGATGTACTAGAAATG 60 Query 61 TTTAATCCAAGTGTGACAATGAGAGTCACTTTCAATTCCAACACAATCGTATCCAATGGT 120 || |||||||| |||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 61 TTCAATCCAAGCGTGACAATGAGAGTCACTTTCAATTCCAACACAATCGTCTCTAATGGT 120 Query 121 CACGAGCTCGCGCCTTCTCTTCTCCTCTCTAAGCCTCGCGTTGAGATCGGTGGCCAAGAT 180 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 121 CACGAGCTCGCGCCTTCTCTTCTCCTCTCTAAGCCTCGAGTTGAGATCGGTGGCCAAGAT 180 Query 181 CTTCGTTCCTTCTTCACCTTAATCATGATGGACCCCGATGCCCCGAGTCCTAGTAATCCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTTCGTTCCTTCTTCACCTTAATCATGATGGACCCCGATGCCCCGAGTCCTAGTAATCCT 240 Query 241 TATATGCGTGAATATCTGCATTGGATGGTGACAGATATTCCCGGGACAACCGATGCTTCT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TATATGCGTGAATATCTGCATTGGATGGTGACAGATATTCCCGGGACAACCGATGCTTCT 300 Query 301 TTTGGGAGAGAGATAGTGAGATATGAGACGCCTAAACCGGTGGCGGGAATACACAGATAC 360 ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct 301 TTTGGGAGAGAGATAGTGAGATACGAAACGCCTAAACCAGTGGCGGGAATACACAGATAC 360 Query 361 GTCTTTGCGCTATTCAAACAGAGAGGGAGGCAAGCTGTGAAGGCAGCGCCGGAAACTAGA 420 |||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||| ||| Sbjct 361 GTCTTTGCGCTATTCAAACAGAGAGGAAGGCAAACTGTGAAGGCAGGGCCAGAAACCAGA 420 Query 421 GAGTGTTTCAACACAAACGCTTTCTCTTCTTACTTTGGTCTTTCTCAACCTGTTGCTGCT 480 ||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||| Sbjct 421 GAGTGTTTCAACACAAAAGCATTCTCTTCTTACTTTGGTCTTTCTCTACCTGTTGCTGCT 480 Query 481 GTTTACTTCAACGCCCAACGTGAAACTGCTCCTCGACGACGTCCTTCTTATTAA 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GTTTACTTCAACGCCCAACGTGAAACTGCTCCTCGACGACGTCCTTCTTATTAA 534 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19459350390 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5