BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62040.1
Length=534
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332437 jgi|Araly1|332437|fgenesh1_pm.C_scaffold_8001780 876 0.0
> Ahg332437 jgi|Araly1|332437|fgenesh1_pm.C_scaffold_8001780
Length=534
Score = 876 bits (474), Expect = 0.0
Identities = 514/534 (96%), Gaps = 0/534 (0%)
Strand=Plus/Plus
Query 1 ATGTCAAGAGAAATAGAGCCACTAATAGTGGGAAGAGTGATAGGAGATGTACTCGAAATG 60
||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||||
Sbjct 1 ATGTCAAGAGAAATAGAACCACTAATAGTAGGAAGAGTGGTAGGAGATGTACTAGAAATG 60
Query 61 TTTAATCCAAGTGTGACAATGAGAGTCACTTTCAATTCCAACACAATCGTATCCAATGGT 120
|| |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 61 TTCAATCCAAGCGTGACAATGAGAGTCACTTTCAATTCCAACACAATCGTCTCTAATGGT 120
Query 121 CACGAGCTCGCGCCTTCTCTTCTCCTCTCTAAGCCTCGCGTTGAGATCGGTGGCCAAGAT 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 CACGAGCTCGCGCCTTCTCTTCTCCTCTCTAAGCCTCGAGTTGAGATCGGTGGCCAAGAT 180
Query 181 CTTCGTTCCTTCTTCACCTTAATCATGATGGACCCCGATGCCCCGAGTCCTAGTAATCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCGTTCCTTCTTCACCTTAATCATGATGGACCCCGATGCCCCGAGTCCTAGTAATCCT 240
Query 241 TATATGCGTGAATATCTGCATTGGATGGTGACAGATATTCCCGGGACAACCGATGCTTCT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TATATGCGTGAATATCTGCATTGGATGGTGACAGATATTCCCGGGACAACCGATGCTTCT 300
Query 301 TTTGGGAGAGAGATAGTGAGATATGAGACGCCTAAACCGGTGGCGGGAATACACAGATAC 360
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 301 TTTGGGAGAGAGATAGTGAGATACGAAACGCCTAAACCAGTGGCGGGAATACACAGATAC 360
Query 361 GTCTTTGCGCTATTCAAACAGAGAGGGAGGCAAGCTGTGAAGGCAGCGCCGGAAACTAGA 420
|||||||||||||||||||||||||| |||||| |||||||||||| ||| ||||| |||
Sbjct 361 GTCTTTGCGCTATTCAAACAGAGAGGAAGGCAAACTGTGAAGGCAGGGCCAGAAACCAGA 420
Query 421 GAGTGTTTCAACACAAACGCTTTCTCTTCTTACTTTGGTCTTTCTCAACCTGTTGCTGCT 480
||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||
Sbjct 421 GAGTGTTTCAACACAAAAGCATTCTCTTCTTACTTTGGTCTTTCTCTACCTGTTGCTGCT 480
Query 481 GTTTACTTCAACGCCCAACGTGAAACTGCTCCTCGACGACGTCCTTCTTATTAA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GTTTACTTCAACGCCCAACGTGAAACTGCTCCTCGACGACGTCCTTCTTATTAA 534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19459350390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5