BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62050.1
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496379 jgi|Araly1|496379|fgenesh2_kg.8__2195__AT5G62050.1 2660 0.0
> Ahg496379 jgi|Araly1|496379|fgenesh2_kg.8__2195__AT5G62050.1
Length=1677
Score = 2660 bits (1440), Expect = 0.0
Identities = 1607/1687 (95%), Gaps = 13/1687 (1%)
Strand=Plus/Plus
Query 11 AACTTAGCCATTCTAAAACCCATTCACCGTCTCTGTTTCGTTCGCCGTGATTCATAGTCG 70
||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 AACTTGGCCGTTCTAAAACCCATTCACCGTCTCTGTTTAGTTCGCCGTGATTCATAGTCT 60
Query 71 TCTCGTCTCACCGTCACCATCACCGTCTTCTTCTTCCATTGACAGGATCTTGTTTAGATT 130
|||| ||||||||||| | | ||| |||||||||||| ||||||||||||||||||
Sbjct 61 TCTCATCTCACCGTCA-C-T----GTCGCCTTCTTCCATTGCCAGGATCTTGTTTAGATT 114
Query 131 CTGCAATGGCTTTCAGGCAAACTTTATCTATAAGGTCCAGGCTTTTCGCTCGTCGTAACC 190
|||||||||||||||||| ||| ||| |||||||||||| || ||||||||||| | ||
Sbjct 115 CTGCAATGGCTTTCAGGCGAACCTTAGCTATAAGGTCCACACTCTTCGCTCGTCGGAGCC 174
Query 191 AACCAGT-TTATCATATTATCCCTCGTGAGAGTGATCATGAAAGGGATTCATTCTGTCAA 249
||||| | ||||||||||||||||| || || ||||||||||||||||||||||| ||||
Sbjct 175 AACCA-TCTTATCATATTATCCCTCTTGCGAATGATCATGAAAGGGATTCATTCTCTCAA 233
Query 250 GAAACATCTCAGAGAAGTTACCATAGCTTTCTTCACCAAAGATCCGTTAACAATTCTGAT 309
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 234 GAAACATCTCAAAGAAGTTACCATAGCTTCCTTCACCAAAGATCCGTTAACAACTCAGAT 293
Query 310 TTCTCCAAAGTTTCTGGAGGAAGCTTACATTTGCCTCTTGCTCCCACGTCTGGTTTTGCT 369
||||||||||||||||||||| ||||| |||| ||| | ||||| ||||||| ||| |||
Sbjct 294 TTCTCCAAAGTTTCTGGAGGAGGCTTATATTTACCTATGGCTCCTACGTCTGCTTTCGCT 353
Query 370 TTCTATCGTTATATGTCAAGTGCACCTGGTGTTGGTTCAGAGAAGATTGGTGTGATGTCT 429
||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||
Sbjct 354 TTCTATCGTTATATGTCAACTGCACCTGGTGTCGGGTCAGAGAAGATTGGTGTGATGTCT 413
Query 430 GACATTGCAGAAGTCATAACCGACTCAACATTGCAAGATGTGCCAGCTCAGGCTGCTGCT 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GACATTGCAGAAGTCATAACCGACTCAACATTGCAAGATGTGCCAGCTCAGGCTGCTGCT 473
Query 490 GCTGTCAGTGAAGTTACACTTGCAGCTGCTGACTCTTTCTTCCCTATCGCGGCCCTTCAG 549
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GCAGTCAGTGAAGTTACACTTGCAGCTGCTGACTCTTTCTTCCCTATCGCGGCCCTTCAG 533
Query 550 CAGTGCATTGATATGGTGCATACATTCACAGGCTTTGAGTGGTGGGCATCCATTGTTGTA 609
|| |||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||
Sbjct 534 CATTGCATTGATATGGTGCATTCATTCACAGGATTTGGGTGGTGGGCATCCATTGTTGTA 593
Query 610 GCAACCATTTTGATCCGATCATCAACAGTTCCTCTCTTGATCAAACAAATGAAAGACACA 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GCAACCATTTTGATCCGATCATCAACAGTTCCTCTCTTGATCAAACAAATGAAAGACACA 653
Query 670 ACCAAGTTAGCGCTGATGAGGCCACGGTTGGAGTCCATCCGGGAGGAAATGCAAAACAAG 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 ACCAAGTTAGCGCTGATGAGGCCACGGTTGGAGTCCATCCGGGAGGAAATGCAAAACAAG 713
Query 730 GGAATGGACTCGGTTACGATGGCAGAAGGTCaaaaaaaGATGAAGAATTTGTTTAAAGAA 789
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GGAATGGACTCGGTTACAATGGCAGAAGGTCAAAAAAAGATGAAGAATTTGTTTAAAGAA 773
Query 790 TATGGTGTCACTCCATTCACCCCAATGAAAGGGATGTTTATTCAGGGACCGCTGTTCATC 849
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 774 TATGGTGTCACTCCATTCACCCCAATGAAAGGAATGTTTATTCAGGGACCTCTGTTCATC 833
Query 850 TGCTTTTTCCTTGCTATTCGAAATATGGCAGAGAAGGTACCTTCATTCCAAACAGGAGGT 909
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 834 TGCTTTTTCCTTGCTATTCGAAATATGGCAGAGAAAGTGCCTTCATTCCAAACAGGAGGT 893
Query 910 GCATTATGGTTTACCGATCTAACAACTCCCGACAGCTTATACATCTTGCCGGTTATAACA 969
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 894 GCATTATGGTTTACCGATCTAACAACTCCCGACAGCTTATACATCTTACCAGTTATAACA 953
Query 970 GGATTGACATTCTTGATAACCGTTGAGTGTAATGCACAAGAAGGCATGGAAGGGAATCCG 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 GGATTGACATTCTTGATAACCGTTGAGTGTAATGCACAAGAAGGCATGGAAGGGAATCCG 1013
Query 1030 ATGGCTGGCACTGTAAAAACTGTTTGTCGGGTTTTTGCTCTCCTCACAGTCCCGATGACA 1089
||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1014 ATGGCTGGCACAGTAAAAAATGTTTGTCGGGGTTTTGCTCTCCTCACAGTCCCGATGACA 1073
Query 1090 ATGAGTTTTCCACAGGCCATATTTTGTTACTGGATCACATCCAACCTGTTCTCTCTCATG 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1074 ATGAGTTTTCCACAGGCCATATTTTGTTACTGGATCACATCCAACCTGTTCTCGCTCATG 1133
Query 1150 TATGGACTTGTGAT-AAAGCGTCCTCAAGTGAAGAAGATGTTACGCATACCTGATCTGCC 1208
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TATGGACTTGTGATTAAA-CGTCCTCAAGTGAAGAAGATGTTACGCATACCTGATCTGCC 1192
Query 1209 TCCACCTCCTCCAGGTCAACAACCTTCATTTGACCTGTTTTCAGCTCTCAAGAAAATGAA 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TCCACCTCCTCCAGGTCAACAACCTTCATTTGACCTGTTTTCAGCTCTCAAGAAAATGAA 1252
Query 1269 AGCCATGACACAGGACCATACACAGAACCAGATAGAACCACCTTCGCCAGTAAACCCGAG 1328
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1253 AGCCATGACACAGGACCATACACAGAACCAGACATTACCACCTTCGCCAGTAAACCCGAG 1312
Query 1329 GCTTTCCTCAACA-TCGCTGAGTCCTGTTAGTAAGAGGCTCAAGGCTTTGGAGAGCCAAG 1387
| | || ||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 GATCTCTTCA-CAATCGCTGAGTCCTGTTAGTAAGAGGCTCAAGGCTTTGGAGAGCCAAG 1371
Query 1388 TAAAGGGAAGGAAGAAGAATAGCAGCAAGAAGAAGTGATTTAAAACGGTGCATACTATTT 1447
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1372 TGAAGGGAAGGAAGAAGAATAGCAGCAAGAAGAAGTGATTCAAAATGGTGCATACTATTT 1431
Query 1448 TTGTTAAGAGGGCCAAACGaaaaaaaTAATAAAGCTTTTGAGTCGAAAGTGAACACAGAA 1507
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1432 TTGTTA-GAGGGCCAAACGAAAAAAATAATAAAGCTTTTGAGTCAAAAGTGAACACAGAT 1490
Query 1508 TTTTCTCACTGATGAAACTACTCTGTGAGCTAAAAAGCTGGAGGCAGCTATTGTAAGTTT 1567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 TTTTCTCACTGATGAAACTACTCTGTGAGCTAAAAAGCTGGAGGCAGCTATTGTAAGTTT 1550
Query 1568 GTTTTGACCAATTATAGAATAGAAGATTGTTTTTATAGAAACATTTTGGATAACATATAC 1627
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1551 GTTTTGACCAATTAGAGAATAGAATATTGTTTTTATAGAAACATTTTGGATAACATATAC 1610
Query 1628 TTTTTTATCTTGTTAAGTAACAGAACTTGAACAACATTGGATCTTTTTGAACATCTTGGT 1687
| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1611 TCTTTTATCTTGTTAAGTAACAGAACTTGAACAAAATTGGATCTTTTTGAACATGTTGGT 1670
Query 1688 AATGGTT 1694
|||||||
Sbjct 1671 AATGGTT 1677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64258243315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5