BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G62065.1

Length=363
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950971 jgi|Araly1|950971|scaffold_802858.1                        510    2e-144


> Ahg950971 jgi|Araly1|950971|scaffold_802858.1
Length=405

 Score =  510 bits (276),  Expect = 2e-144
 Identities = 335/364 (92%), Gaps = 2/364 (1%)
 Strand=Plus/Plus

Query  1    ATGACGAGATCATTCTCTCCGGTGGTGTCTCTCTTCTTATTACTACTGCAAACGATATGT  60
            ||||||||| |||||||||||||||||| | |||||||| |||||||||   ||||||||
Sbjct  23   ATGACGAGACCATTCTCTCCGGTGGTGTTTTTCTTCTTACTACTACTGCCGGCGATATGT  82

Query  61   TCAGCCACTGTGGAAAACGCAGCGGATTGTGCGGCGGTGGGAACGCTGATATCGTCGTGC  120
            |||||||| || |||||||| || || |||||||| || |||||||||||||| ||||||
Sbjct  83   TCAGCCACCGTAGAAAACGCGGCCGACTGTGCGGCAGTAGGAACGCTGATATCCTCGTGC  142

Query  121  ACAGAGTTTGTGAACTACGGGTATCCGGATCCGATACCAGGGTCGA-GTTGCTGCGACGC  179
            || ||||||||||| |||||||| |||||||||||||| ||||| | |||||||||||||
Sbjct  143  ACGGAGTTTGTGAATTACGGGTACCCGGATCCGATACCCGGGTC-ACGTTGCTGCGACGC  201

Query  180  GATGACTGTGATCGGAACTTACTCTGATTCGTCGGAGAAGAGAAAGTGGCTGTGTAACTG  239
            |||||| || |||||||| ||||||||||||| |||||||||||||||||| ||||||||
Sbjct  202  GATGACCGTAATCGGAACGTACTCTGATTCGTTGGAGAAGAGAAAGTGGCTCTGTAACTG  261

Query  240  CTTCATGGATCTCATCAATGTCTATAACTCTAACGCCACCGCCATTTCTACTTTGTCTGG  299
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  262  CTTCATGGATCTCATCAATGTCTATAACCCTAACGCCACCGCCATTTCTACTTTGTCTGG  321

Query  300  CTTCTGCGGCGTCGTTTTGGGCTTCACCATCGACCCTAACACCGACTGCAACTTCATTCA  359
            ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct  322  CTTCTGCGGCGTCGTTTTGGGCTTCACCATCGATCCTAACACCGATTGCAACTTCATTCA  381

Query  360  ATGA  363
            ||||
Sbjct  382  ATGA  385



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12934744671


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5