BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62070.1
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496381 jgi|Araly1|496381|fgenesh2_kg.8__2197__AT5G62070.1 1977 0.0
Ahg940182 jgi|Araly1|940182|scaffold_600726.1 206 5e-52
> Ahg496381 jgi|Araly1|496381|fgenesh2_kg.8__2197__AT5G62070.1
Length=1419
Score = 1977 bits (1070), Expect = 0.0
Identities = 1317/1431 (92%), Gaps = 37/1431 (3%)
Strand=Plus/Plus
Query 47 TCTCAG-ATATTAAATAAAGTGTTAATCAACCGGAGAACTCTCCGACAAAACCTCGCCGA 105
|||||| | ||||||| |||||| |||| ||||||||| |||| || ||||| || ||||
Sbjct 23 TCTCAGCA-ATTAAATGAAGTGTAAATCCACCGGAGAAATCTCTGATAAAACTTCTCCGA 81
Query 106 CGATTTTCCGACGATGAAAGATGGGCTTTTTCGGGAGACTGTTCGGGAGTaaaaaaaaGT 165
|||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||
Sbjct 82 CGATTTTCCGACGATGAACGATGGGCTTTTTTGGGAGACTGTTCGGGAGT---AAAAAGT 138
Query 166 CTGATAAAGCTGCTTCGTCGAGAGATAAACGGAGGTGGAGCTTCACCACCAGATCTTCAA 225
|||||||| | ||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 139 CTGATAAATCAGCTCCGTCGAGAGATAAACGGAGGTGGAGCTTCACTACTAGATCTTCAA 198
Query 226 ATTCCAGCAAGAGAGCTCCGGCGGTGACGTCGGCTTCGGTGGTTGAGCAAAATGGTTTGG 285
|||||||||||||||||||||||| || | | | || |||| ||||||||| |||||||
Sbjct 199 ATTCCAGCAAGAGAGCTCCGGCGGCGAAGAC-G-TT-TGTGGATGAGCAAAACGGTTTGG 255
Query 286 ATGCTGACAAACATGCGATAGCTGTGGCTGCTGCGACAGCCGCGGTGGCGGAAGCAGCTC 345
|||| ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 256 ATGCCGACAAACATGCAATAGCCGTGGCTGCTGCGACCGCCGCGGTGGCTGAAGCAGCTC 315
Query 346 TTACTGCTGCTCATGCGGCAGCTGAAGTCGTGAGACTAACAAGCGGAAACGGCGGGAGAA 405
||||||||||||||||||||||||||||||||||||| | | | || |||||||||
Sbjct 316 TTACTGCTGCTCATGCGGCAGCTGAAGTCGTGAGACT--C-A-C---AA--GCGGGAGAA 366
Query 406 ACGTCGGTGGCGGTGGAAACTCGTCGGTGTTTCAAATAGGAAGAAGTAACCGTCGGTGGG 465
| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 367 ATGGCGGTGGCGGTGGAAACTCGTCGGTGTTTCAAATCGGAAGAAGTAACCGTCGGTGGG 426
Query 466 CTCAGGAGAATATCGCGGCGATGAAGATTCAATCCGCTTTTCGTGGTTATCTGGCGAGGA 525
||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 427 CTCAGGAGAATCTCGCGGCCAGGAAGATTCAATCCGCTTTTCGTGGTTATCTGGCAAGGA 486
Query 526 GAGCATTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGGACACATAG 585
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 487 GAGCATTAAGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTTAGAGGACACATAG 546
Query 586 TGAGAAAACAAACTGCAGATATGCTTAGAAGGATGCAGACTCTTGTTCGTCTTCAATCTC 645
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 547 TGAGAAAACAAACTGCAGATATGCTTAGAAGGATGCAGACTCTGGTTCGTCTCCAATCTC 606
Query 646 AAGCTCGTGCTCGAGCCTCTCGTTCTTCTCACTCCTCTGCTTCTTTCCACTCCTCCACCG 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 607 AAGCTCGTGCTCGAGCCTCTCGTTCTTCTCACTCCTCTGCTTCTTTCCACTCCTCAACCG 666
Query 706 CTCTTTTGTTCCCATCTTCCTCGTCTTCTCCACGTTCTCTTCACACGCGCTGCGTTTCAA 765
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 667 CTCTATTGTTCCCATCTTCCTCATCTTCTCCACGTTCTCTCCACACGCGCTGCGTTTCAA 726
Query 766 ACGCTGAAGTCAGCTCTCTTGACCACCGTGGAGGCTCTAAGCGGTTAGATTGGCAGGCGG 825
||||||||||| |||| | |||||||||||||||||||| |||||||||||||| || |
Sbjct 727 GCGCTGAAGTCATCTCTATGGACCACCGTGGAGGCTCTAAACGGTTAGATTGGCAAGCTG 786
Query 826 AGGAAAGCGAAAATGGAGACAAGATCCTAGAAGTGGATACTTGGAAGCCTCATTATCATC 885
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 787 AGGAAGGCGAAGATGGAGACAAGATCCTAGAAGTGGATACTTGGAAGCCTCGTTATCATC 846
Query 886 CCAAACCGTTACGTTCAGAGAGAAACAATGAGTCTCCGAGGAAACGACAACAATCT-TTG 944
| |||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 847 CGAAACCGCTACGTTCAGAGAGAAACAATGAGTCTCCAAGGAAAAGACAACAATCTCTT- 905
Query 945 TTGGGTCCGAGAAGTACAGAGAATAGTCCTCAAGTTGGTTCTAGTGGGTCAAGAAGAAGA 1004
||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 906 TTGGGTCCGAGAAGTACAGAGAACAGTCCTCAAGTTGGGTCTAGTGGGTCGAGAAGAAGA 965
Query 1005 ACTCCTTTTACGCCGACGTCAAGAAGCGAGTATTCTTGGGGATGTAATAACTATTACTAC 1064
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 966 ACTCCTTTTACGCCAACGTCAAGAAGTGAGTATTCTTGGGGATGTAATAACTATTACTAC 1025
Query 1065 TCGGGTTATCACCCGAATTACATGGCTAACACTGAGTCTTATAAAGCTAAAGTTCGGTCA 1124
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1026 TCGGGTTACCACCCGAATTACATGGCTAACACTGAGTCTTATAAAGCTAAAGTCCGGTCA 1085
Query 1125 CAAAGTGCGCCGAAACAGAGAGTTGAGGTCTCTAATGAGACCAGTGGCTACAAGAGATCT 1184
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 CAGAGCGCGCCGAAACAGAGAGTTGAGGTCTCTAATGAGACCAGTGGCTACAAGAGATCT 1145
Query 1185 GTTCAGGGACAGTATTACTACTACACAGCGGTAGAAGAAGAGAGTTTGGATGTTGGAAGC 1244
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1146 GTTCAGGGACAGTATTACTACTACACGGCGGTAGCAGAAGAGAGTTTGGATGTTGGAAGC 1205
Query 1245 GCTGGTTACTACGGAGGAGGAGGAGGCGATTCTGATCGATTGAATCGGAACCAAAGTGCG 1304
| |||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1206 CCCGGTTACTATGGAGGAGGAGT------TTCTGATCGATTGAATCGGAACCAAAGTGCA 1259
Query 1305 AAATCGAGGATGCATTCTTCGTTTCTTGTTTAGATTGTGATTCTCTTTCTCTTCtttttt 1364
|||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct 1260 AAATCGAGGATGCATTCTTCGTTTCTTGTTTAGATTATGATTCTCTTT-TCTT-TTT--- 1314
Query 1365 ttGGTTTGAGTTTGGTAATTTTCCAGAAGAGATAAGTAT-TAACACTGGATGTGTAAATT 1423
| |||||||||||||||||||||| ||||| |||| | |||| ||||||||||||||
Sbjct 1315 --G-TTTGAGTTTGGTAATTTTCCAGGAGAGACAAGT-TGTAAC--TGGATGTGTAAATT 1368
Query 1424 GTTGTTAACAAGTTTCGATTGCTTGCAAAAGAAGGAACACCACTCTGTTCT 1474
||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1369 GTTGTTAACAAGTTTCGATTGCTTGCAAAAGAAGGAACATAACTATGTTCT 1419
> Ahg940182 jgi|Araly1|940182|scaffold_600726.1
Length=1246
Score = 206 bits (111), Expect = 5e-52
Identities = 233/290 (80%), Gaps = 16/290 (6%)
Strand=Plus/Plus
Query 413 TGGCGGTGGAAACTCGTCGGTGTTTCAAAT-AGGAAGAAGTAACCGTCGGTGGGCTCAGG 471
||| ||| ||||||||||||| ||||| | | | ||||| ||||||||| |||| |
Sbjct 275 TGGTGGTAGAAACTCGTCGGTAAAACAAATCA-GTCGGAGTAATCGTCGGTGGTCTCAAG 333
Query 472 AGAATATCGCGGCGATGAAGATTCAATCCGCTTTTCGTGGTTATCT-GGCGAGGAGAGCA 530
|| ||| |||||||||||||||||||||||||||||||| || || ||||||||| ||
Sbjct 334 AGTATAAAGCGGCGATGAAGATTCAATCCGCTTTTCGTGGCTA-CTTGGCGAGGAGGGCT 392
Query 531 TTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGG-ACACATAGTGAG 589
||| ||||||| ||||||||||||||||||||||| ||||||| ||| |||||| || ||
Sbjct 393 TTAAGAGCACTGAAGGCATTAGTGAAGCTTCAAGCGTTAGTGA-AGGGACACATTGTAAG 451
Query 590 AAAACAAACTGCAGATATGCTTAGAAGGATGCAGACTCTTGTTCGTCTTCAATCTCAAGC 649
|||||||| || |||||||| | | ||||| || || ||||| || | | ||||
Sbjct 452 GAAACAAACGGCTGATATGCTGCGTCGAATGCAAACGCTGGTTCGGCT-C---C--AAGC 505
Query 650 TCGTGCTCGAGCCTCTCGTTCTTCTCAC-TCCTCTG-CTTCTTTCCACTC 697
|| |||||||| || |||||||||||| | |||| || ||| ||||||
Sbjct 506 ACGAGCTCGAGCTTCACGTTCTTCTCACGTT-TCTGACT-CTTCCCACTC 553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55192765005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5