BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62080.1
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496383 jgi|Araly1|496383|fgenesh2_kg.8__2199__AT5G62080.1 586 7e-167
> Ahg496383 jgi|Araly1|496383|fgenesh2_kg.8__2199__AT5G62080.1
Length=560
Score = 586 bits (317), Expect = 7e-167
Identities = 493/569 (87%), Gaps = 47/569 (8%)
Strand=Plus/Plus
Query 1 ATATACATAGAACTACATC-AGATATCTAT--AG-AAACAAACTTATCCATGGCAATAAT 56
||||| ||||||||||||| | |||| ||| || |||||| ||||| | | ||
Sbjct 1 ATATAGATAGAACTACATCAAAATATATATAAAGAAAACAAGCTTAT-C----C----AT 51
Query 57 GGCATCGTTCAAGTCTTTCGCAGCCGTTCTCAGTGTCCTTTTTCTTGCCATGACTGCTAT 116
|||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 52 GGCATCGTTCAAGTCTTTGGCAGCCGTTCTCAGTGTTCTTTTTCTAGCCATGACTGCTAT 111
Query 117 AGAAACGGTAGTTCAAGCCCAAGAATGTGGCAACGATCTAGCAAATGTGCAGGTATGCGC 176
|||| |||| |||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 112 AGAACCGGTGGTTCAAGCCCAAGAGTGTGGCAACGATCTAGCAAATGTGCAGGTGTGTGC 171
Query 177 CGCCATGGTGCTGCCCGGTTCAGGCAGACCAAATTCAGAGTGTTGCGCCGCACTTCAATC 236
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 172 CGCCATGGTGCTGCCCGGTTCAGGCAGACCGAATTCAGAGTGTTGCGCCGCACTTCAATC 231
Query 237 TACTAATAGAGATTGTCTATGCAACGCTCTCCGTGCAGCCACCTCTCTTCCTTCGCTTTG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TACTAATAGAGATTGTCTATGCAACGCTCTCCGTGCAGCCACCTCTCTTCCTTCGCTTTG 291
Query 297 TAACCTTCCTCCTGTGGATTG---T--GG-T--A-T--A-----AA-T------GCTTAG 333
||||||||||||||||||||| | || | | | | || | ||||||
Sbjct 292 TAACCTTCCTCCTGTGGATTGCGGTACGGATTTACTTTACTTCTAAGTATAAATGCTTAG 351
Query 334 TTAAGC--T--A-CGA-GTCAATTCCAAGATGATCAAGGAAAACGGGAAAA-TAAAGAAT 386
|||||| | | | | ||||| ||| |||||||||||||||||||||||| ||||||||
Sbjct 352 TTAAGCACTTGAGCTAAGTCAAGTCCGAGATGATCAAGGAAAACGGGAAAAATAAAGAAT 411
Query 387 AATGAGAAATATTCCAGTCTTATGTTTTTTCTTCTAACTTCTGC-T-TT--ACTATAATA 442
|||| ||| ||||| ||| ||||||||||| |||| |||||||| | || | |||||||
Sbjct 412 AATGGGAACTATTCTAGTTTTATGTTTTTTTTTCTCACTTCTGCCTCTTTTATTATAATA 471
Query 443 AAGTTCTAGTAGTTTTGCTTAGAAATTTAGATACTACTAGTATAATAAAAAGCTTTGATA 502
||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 472 AAGTTCTGGTAGCTTTGCTTAGAAATTTAGATACTACTAGTGTAATAAAAAGCTTTGCTA 531
Query 503 ATTATGAGAATAAAACATTCCCGGTCTGA 531
|||||||||||||||| ||||| ||||||
Sbjct 532 ATTATGAGAATAAAACCTTCCCTGTCTGA 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24208052295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5