BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62100.1
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496387 jgi|Araly1|496387|fgenesh2_kg.8__2203__AT5G62100.1 926 0.0
> Ahg496387 jgi|Araly1|496387|fgenesh2_kg.8__2203__AT5G62100.1
Length=962
Score = 926 bits (501), Expect = 0.0
Identities = 543/563 (96%), Gaps = 4/563 (1%)
Strand=Plus/Plus
Query 106 ACAACTTCCGGCGACGGTGAAATGGAGCTCCGACCTGGAGGAATGGTTGTACAGAAAA-G 164
||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
Sbjct 22 ACAGCTTCCGGCGACGGTGAATTGGAGCTCCGACCTGGAGGAATGGTTGTACA-AAAACG 80
Query 165 GACGGATCATAGCTCAAGCGTGCCACGTGGCATTCGGGTTCGGGTCAAATACGGGTCGGT 224
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 81 AACGGAACATAGCTCTAGCGTGCCACGTGTCATTCGGGTTCGGGTCAAATACGGGTCGGT 140
Query 225 CCATCACGAGATCAGTATCAACTCTCAATCTACTTTCGGGGAATTAAAGAAGATATTGTC 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CCATCACGAGATCAGTATCAACTCTCAATCTACTTTCGGGGAATTAAAGAAGATATTGTC 200
Query 285 TGGTGCGACAGGAGTTCATCATCAAGACATGCAGATTATATACAAAGACAAAGAAAGAGA 344
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 201 TGGTGCGACAGGAGTTCATCATCAAGACATGAAGATTATATACAAAGACAAAGAAAGAGA 260
Query 345 CTCAAAGATGTTTCTTGATCTTTCTGGTGTCAAAGATCGTTCGAAACTTATTCTTATAGA 404
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 261 TTCTAAGATGTTTCTTGATCTTTCTGGTGTCAAAGATCGTTCGAAACTTATTCTTAAAGA 320
Query 405 AGATCCCATTTCTCAGGAGAAACGTCTCCTTGAGTTGAGGAAAATCGCCACCAAAGAGAA 464
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 321 AGATCCGATTTCTCAGGAGAAACGTCTCCTTGAGTTGAGGAAAATCGCCGCCAAAGAGAA 380
Query 465 ATC-ATCTAAAGCAATCTCTGATATTAGTTTCCAAGTCGAAAGACTCGCCGGACAACTGT 523
||| | |||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 381 ATCCA-CTAAAGCAATCTCTGATATTAGCTTCCAAGTCGAAAGACTCGCTGGACAACTGT 439
Query 524 CGGCGTTTGATACAGTGATTGGTAAAGGAGGGAAAGTTGAAGAGAAGAATCTTGAGAATT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CGGCGTTTGATACAGTGATTGGTAAAGGAGGGAAAGTTGAAGAGAAGAATCTTGAGAATT 499
Query 584 TGATGGAGATGTTGATGAATCAATTGGTCAAGCTCGATGCCATCTCAGGTGATGGAGACG 643
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 500 TGATGGAGATGTTGATGAATCAATTGGTGAAACTCGATGCCATCTCAGGTGATGGAGACG 559
Query 644 TTAAATTGAAGAAGAAGATGCAG 666
|||||||||||||||||||||||
Sbjct 560 TTAAATTGAAGAAGAAGATGCAG 582
Score = 348 bits (188), Expect = 6e-95
Identities = 336/402 (84%), Gaps = 32/402 (8%)
Strand=Plus/Plus
Query 698 AGGAGGAAAGATTACACAAGTATGTTGAGGCTCTCGACTTGTTGAAGATCAAGAACTCAA 757
||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||
Sbjct 581 AGGAGGAAAGATTACACAAGTATATTGAGGCTCTCGATTTGTTGAATATCAAGAACT--- 637
Query 758 GGCAACCGCAAACGAAACCAAAGCCGCAATACAAGGAACGGGAAATGCTGACATTTTACG 817
||| ||||| || | || || |||||||||||||| || |||| |||||| | |
Sbjct 638 --CAA-CGCAACCG----C-AA-CCTCAATACAAGGAACGAGATTTGCTCACATTTGATG 688
Query 818 AGGAGGCGTCAAGGAAACCGACGGCCTCCTCATCAAGTCCTCCGGTGATCATAACAACAA 877
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 689 AGGAAGCGTCAAGGAAACCGACGATCTCCTCATCAAGTCCTCCGGTGATCATAACAACGA 748
Query 878 GATGGGAAACGTTTGATTCTAGTTCAGCCTCCACG-GCA---AC-C-CTACAACCCGTTA 931
||||||||||||||||||||| ||| ||||||||| || || | ||||| ||||||
Sbjct 749 GATGGGAAACGTTTGATTCTAATTCCGCCTCCACGACCACGGACACTGTACAAACCGTTA 808
Query 932 GACCGGTTCACCCAAAATTTAAATGGGAATTATTCAATTAAT-ATC-TAGATATT-A-AT 987
||||||||||||||||||||||||||||||||||||||||| | || |||| | ||
Sbjct 809 AACCGGTTCACCCAAAATTTAAATGGGAATTATTCAATTAATTAAGATATATATACACAT 868
Query 988 TACACGATAATATAATATACTATACTTAGTTTTCAGATTTATTGTAAGGTGTAACATATG 1047
|||||||||||||| || |||||| |||||| | ||| |||||| |||||||||||
Sbjct 869 TACACGATAATATATTACACTATAATTAGTT---A--TTTCCTGTAAGTTGTAACATATG 923
Query 1048 TGATTATTTTT-G-TCTAGTTGTATATGATTTGTGATTGGTC 1087
||||| ||||| | ||||| ||||||| |||||||||||
Sbjct 924 TGATTTTTTTTTGGTCTAGC---ATATGATCTGTGATTGGTC 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42964527459
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5