BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62110.1
Length=2192
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332444 jgi|Araly1|332444|fgenesh1_pm.C_scaffold_8001787 880 0.0
> Ahg332444 jgi|Araly1|332444|fgenesh1_pm.C_scaffold_8001787
Length=1920
Score = 880 bits (476), Expect = 0.0
Identities = 808/960 (84%), Gaps = 56/960 (6%)
Strand=Plus/Plus
Query 458 GTAATGGCAACGGGCATCTTGGTGAAAGTCTAGG-CGCCATGAACTGGAATCTCAACAAC 516
|||||| ||| || |||||||||||||||| || ||||||||||||||||||| | |||
Sbjct 527 GTAATGACAATGGATATCTTGGTGAAAGTCT-GGACGCCATGAACTGGAATCTCTATAAC 585
Query 517 AATGATGTGAGGAACTATGAGAGTTCAACTTCGAGGTTTTCCTCTCCATTTTCATCGTTC 576
|| ||||||||||| ||| |||||||||||||| | ||||
Sbjct 586 AACAATGTGAGGAACCATGGGAGTTCAACTTCGA-G--------------------GTTC 624
Query 577 TTACACAACAAGGTTCAGCCACATCACAATTTAATTTCACAAACGGATGGTCTGCTTTCT 636
||||||||||||||||| |||||||||||||| | | |||||||||||| |||||| ||
Sbjct 625 TTACACAACAAGGTTCAACCACATCACAATTTCACTGCACAAACGGATGATCTGCTACCT 684
Query 637 ACAAGCATCCTTGATACA--T-------CTCAAGTTCCTTCTTTTGGACAATATGGTATA 687
| ||||||| |||||||| | ||||||||||||| |||||||| |||||||||
Sbjct 685 AGAAGCATCTTTGATACATCTCAAGCGCCTCAAGTTCCTTCATTTGGACAGTATGGTATA 744
Query 688 CCAAATGATGTTGTCGGTATGGAA-CCTGAATTTGGTACTAGTTACATGCATAGTAACTA 746
||||||||||| ||||||| ||| |||| ||||||||| |||| ||||||| ||||||
Sbjct 745 ACAAATGATGTTATCGGTAT-GAACCCTGGTTTTGGTACTGGTTATATGCATAATAACTA 803
Query 747 CAATGGTATCAATACTGATCAAGTTGGAAATCTGGTTGGACTTGGTAGAGAAAGAGTTAA 806
|| ||||||||||||||||||| |||||||||||| |||||||||| ||| ||||||| |
Sbjct 804 CACTGGTATCAATACTGATCAAATTGGAAATCTGGGTGGACTTGGTGGAGCAAGAGTTTA 863
Query 807 TGTTAATGGTAATGTCTCTCTTGGTCAAAATTTGGGTAGTATGAATTGGAATTTCGATGA 866
|| | ||||||||||||||||||||||||||| ||||| || || ||||||||||||||
Sbjct 864 TGGTGATGGTAATGTCTCTCTTGGTCAAAATTCGGGTACCATAAACTGGAATTTCGATGA 923
Query 867 AAACAACATGAGTAATCATGGAAGTTCAACTTCGAGGTTTTCTTCTCCATTTTCATCATT 926
|||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 924 AAACAACATGAGTAATTATGGAAGTTCAAATTCGAGGTTTTCTTCTCCATTATCATTGTT 983
Query 927 CGA-G--GATCAGTCACTAAGTCATTTAAACGAGGAAACAAATGAGTTGGTTCCTGGATT 983
| | | || |||||||| ||||||||||| | | |||| ||||||||||||||| | |
Sbjct 984 CAATGAAGAGCAGTCACTGAGTCATTTAAATGCGCAAACGGATGAGTTGGTTCCTGTACT 1043
Query 984 AGAGAATCTAAGCCTATACAATGATCATCAAAGCATCAACCCATTT-CTTGGCAATACGA 1042
||||||||||||| | |||||||||||||| ||||||||||||||| || ||||||
Sbjct 1044 AGAGAATCTAAGCTTGTACAATGATCATCAGAGCATCAACCCATTTTCT-GGCAAT---- 1098
Query 1043 TTAATTCCCATTTTGTTGAGA-ATCAGGATCAAGGTTTAGTGAATAATGA-AAATCTTGA 1100
| || ||||| || | | ||||| |||||||| ||||| | || | |||| || |
Sbjct 1099 T-----CCAATTTTCTTCA-ATATCAGCATCAAGGTCAAGTGAGTGAT-ACAAATTTTCA 1151
Query 1101 ATTTGCTAACGATGATCAACTGGAAAGGAATGAAATTCTTACTACTTATTCTGTTGAGGA 1160
|||||| ||| ||||||||||||||| |||| ||| ||| || ||| |||| ||||||
Sbjct 1152 ATTTGCCAACCATGATCAACTGGAAAAAAATGCAATGCTTGCTGCTTGTTCTACTGAGGA 1211
Query 1161 TATTAATAATTTGAGCATTAATAACGTGAAGTTAAA-CTCTAATGGGGAAACATTGAATT 1219
|||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 1212 CATTAATAATTTGAGCATTAATAACGTGAAGG-AAAGCTCTAATGAGGAAACATTGAATT 1270
Query 1220 CTACTGCTGCTAATTTGGAAATGCTTTTTCCTACTCTTGACATGAACATTGTAAATCAGC 1279
||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1271 CTATTGCTGCTAATTTGGAAATGCTTTTTCCTACTCATGACATGAACATTATAAATCAGC 1330
Query 1280 ATCAAGGTCAAGTGTTGAGTGGTGGAAATCTTGAATTTGCCAACGATAATCAACTTGAA- 1338
|||||||||||||||||||||||| ||||| |||||||||||| |||||||||||| ||
Sbjct 1331 ATCAAGGTCAAGTGTTGAGTGGTGAAAATCGTGAATTTGCCAATGATAATCAACTT-AAT 1389
Query 1339 AGGAATGCAATTCTTGCTGGTTATTCTATTGAGGATATTAATAATTTGAGCATTAATAAC 1398
|||||| ||||||||||| | ||||| |||||||||||||| ||||| |||||||||||
Sbjct 1390 AGGAATTCAATTCTTGCTACTCATTCTCTTGAGGATATTAATTATTTGTGCATTAATAAC 1449
Score = 202 bits (109), Expect = 1e-50
Identities = 182/216 (84%), Gaps = 9/216 (4%)
Strand=Plus/Plus
Query 1399 CATCAAGGTCAAGTGTTGAGTGGTGTAAATTTTGAATTTGCCAACGATAATCAATTCGAA 1458
|||||||||||| | |||||| | ||||||| ||||||||||| || ||||| | |||
Sbjct 1120 CATCAAGGTCAA--G-TGAGTGATACAAATTTTCAATTTGCCAACCATGATCAACTGGAA 1176
Query 1459 AGGAATGCAATTCTTGCTGGTTATTCTATTGAGGATATTAATAATTTGAGCATTAATAAC 1518
| |||||||| ||||||| || ||||| |||||| ||||||||||||||||||||||||
Sbjct 1177 AAAAATGCAATGCTTGCTGCTTGTTCTACTGAGGACATTAATAATTTGAGCATTAATAAC 1236
Query 1519 GTGAATGACAA-CTCTAATGAAGAAACATTGAACTCTATTGCTGCTAATAATG-AAATGA 1576
||||| || || ||||||||| ||||||||||| ||||||||||||||| || |||||
Sbjct 1237 GTGAAGGA-AAGCTCTAATGAGGAAACATTGAATTCTATTGCTGCTAATT-TGGAAATGC 1294
Query 1577 ATTTTACTATTC-TCGACGTGAACACTATAAATCAG 1611
|||| ||| || | ||| |||||| ||||||||||
Sbjct 1295 TTTTTCCTACTCAT-GACATGAACATTATAAATCAG 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82503470670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5