BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62120.1
Length=438
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332445 jgi|Araly1|332445|fgenesh1_pm.C_scaffold_8001788 363 8e-100
> Ahg332445 jgi|Araly1|332445|fgenesh1_pm.C_scaffold_8001788
Length=465
Score = 363 bits (196), Expect = 8e-100
Identities = 392/477 (82%), Gaps = 51/477 (11%)
Strand=Plus/Plus
Query 1 ATGACAGCAAAAGATTCGTCAGAACCAGTTACTACGCTT--A-CTCAATTCAACAATATA 57
|||||||||||||||||||||| | |||| ||| | ||| | |||||||||||| |||
Sbjct 1 ATGACAGCAAAAGATTCGTCAGCAGCAGTAACTGCACTTAGAGGTCAATTCAACAAAATA 60
Query 58 GATGTTGTAATCACCGATTACCATATGCCTGGTTTGAA-T-G---G-TGTTCAGCTAAAA 111
|||||||||||||||||||||||||||||||||||||| | | | |||||||||||||
Sbjct 61 GATGTTGTAATCACCGATTACCATATGCCTGGTTTGAAATTGAATGGTGTTCAGCTAAAA 120
Query 112 AAGAGAATTGATGAAGAATTTGGGAATTTGCCTGTTATTGATCTAT----ACAGGAACAT 167
||||||||| |||||||||||||||||| || ||||||| | ||| ||||||||||
Sbjct 121 CAGAGAATTGCTGAAGAATTTGGGAATTTACCAGTTATTGGTATATTTGGACAGGAACAT 180
Query 168 TGAGCACG--AGGAGTTGTT-TCGTCG-AGCTCTTTGTTTCATGCATAAACCAATCTCAC 223
||||||| ||| ||||| | | || ||||||||||||||||| | ||||||||||||
Sbjct 181 AGAGCACGCGAGGCGTTGTCCT-G-CGGAGCTCTTTGTTTCATGCGTCAACCAATCTCAC 238
Query 224 GTCGTGATCTCAACAGCCTCAACGTTGTATGTCAACAAGCTCTCCGCCATAGAATGAACG 283
|||||| | | |||||||||||||| |||||||||||||||||| ||||||||
Sbjct 239 ATCGTGA-C-C-------TCAACGTTGTATGTGAACAAGCTCTCCGCCATAAAATGAACG 289
Query 284 GAGAAACCAATTTAAATGGTTCGGGACAAAATGTGA-----CCG--A-C----GATCCAG 331
|||||||| || |||||||||| |||||||| || || | | ||| |||
Sbjct 290 GAGAAACCGATCCAAATGGTTCGAAACAAAATGGGAAGAGACCATCAACCAACGATTCAG 349
Query 332 ATGAT--------T-GGCTACGGCTTCGAGAAAAGCCTAAGCTCAAATGGACAAAACCTC 382
||||| | |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 350 ATGATGGAAAACATTGGCTACGGCTTCGAGAGAAGCCTAAGCTCAAATGGACAAAACCTC 409
Query 383 TTCAG-CATAGATTCATGAGCGCTCTTAAAAGCCTTGGTGTCGCTAGTAAGTATTAA 438
||||| | |||||||||||| || ||||||| ||||||||| |||||||||||||||
Sbjct 410 TTCAGTC-TAGATTCATGAGAGCCCTTAAAAACCTTGGTGTTGCTAGTAAGTATTAA 465
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15796413846
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5