BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62120.1 Length=438 Score E Sequences producing significant alignments: (Bits) Value Ahg332445 jgi|Araly1|332445|fgenesh1_pm.C_scaffold_8001788 363 8e-100 > Ahg332445 jgi|Araly1|332445|fgenesh1_pm.C_scaffold_8001788 Length=465 Score = 363 bits (196), Expect = 8e-100 Identities = 392/477 (82%), Gaps = 51/477 (11%) Strand=Plus/Plus Query 1 ATGACAGCAAAAGATTCGTCAGAACCAGTTACTACGCTT--A-CTCAATTCAACAATATA 57 |||||||||||||||||||||| | |||| ||| | ||| | |||||||||||| ||| Sbjct 1 ATGACAGCAAAAGATTCGTCAGCAGCAGTAACTGCACTTAGAGGTCAATTCAACAAAATA 60 Query 58 GATGTTGTAATCACCGATTACCATATGCCTGGTTTGAA-T-G---G-TGTTCAGCTAAAA 111 |||||||||||||||||||||||||||||||||||||| | | | ||||||||||||| Sbjct 61 GATGTTGTAATCACCGATTACCATATGCCTGGTTTGAAATTGAATGGTGTTCAGCTAAAA 120 Query 112 AAGAGAATTGATGAAGAATTTGGGAATTTGCCTGTTATTGATCTAT----ACAGGAACAT 167 ||||||||| |||||||||||||||||| || ||||||| | ||| |||||||||| Sbjct 121 CAGAGAATTGCTGAAGAATTTGGGAATTTACCAGTTATTGGTATATTTGGACAGGAACAT 180 Query 168 TGAGCACG--AGGAGTTGTT-TCGTCG-AGCTCTTTGTTTCATGCATAAACCAATCTCAC 223 ||||||| ||| ||||| | | || ||||||||||||||||| | |||||||||||| Sbjct 181 AGAGCACGCGAGGCGTTGTCCT-G-CGGAGCTCTTTGTTTCATGCGTCAACCAATCTCAC 238 Query 224 GTCGTGATCTCAACAGCCTCAACGTTGTATGTCAACAAGCTCTCCGCCATAGAATGAACG 283 |||||| | | |||||||||||||| |||||||||||||||||| |||||||| Sbjct 239 ATCGTGA-C-C-------TCAACGTTGTATGTGAACAAGCTCTCCGCCATAAAATGAACG 289 Query 284 GAGAAACCAATTTAAATGGTTCGGGACAAAATGTGA-----CCG--A-C----GATCCAG 331 |||||||| || |||||||||| |||||||| || || | | ||| ||| Sbjct 290 GAGAAACCGATCCAAATGGTTCGAAACAAAATGGGAAGAGACCATCAACCAACGATTCAG 349 Query 332 ATGAT--------T-GGCTACGGCTTCGAGAAAAGCCTAAGCTCAAATGGACAAAACCTC 382 ||||| | |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 350 ATGATGGAAAACATTGGCTACGGCTTCGAGAGAAGCCTAAGCTCAAATGGACAAAACCTC 409 Query 383 TTCAG-CATAGATTCATGAGCGCTCTTAAAAGCCTTGGTGTCGCTAGTAAGTATTAA 438 ||||| | |||||||||||| || ||||||| ||||||||| ||||||||||||||| Sbjct 410 TTCAGTC-TAGATTCATGAGAGCCCTTAAAAACCTTGGTGTTGCTAGTAAGTATTAA 465 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15796413846 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5