BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62130.2
Length=2039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950977 jgi|Araly1|950977|scaffold_802864.1 1563 0.0
> Ahg950977 jgi|Araly1|950977|scaffold_802864.1
Length=1074
Score = 1563 bits (846), Expect = 0.0
Identities = 922/959 (96%), Gaps = 4/959 (0%)
Strand=Plus/Plus
Query 685 GTCATGTGTTGATCAATGTCAGAAAACTGGATGCGTGGGGGATACTTGCTTCCAACACTG 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GTCATGTGTTGATCAATGTCAGAAAACTGGATGCGTGGGGGATACTTGCTTCCAACACTG 179
Query 745 TAAATTTTCAGCTGATGGAAAAGCCATTGACGGTCCATGGTACATGCAAGAGCCACTTTA 804
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 TAAATTTTCAGCTGATGGAAAAGCCATTGACGGTCCGTGGTACATGCAAGAGCCACTTTA 239
Query 805 CCTGAGATGGAAACAATGGGATTGCCAAAGTGATTGTCAGTACGAATGCATGATGACaag 864
||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 240 CCTAAGATGGAAACAATGGGATTGCCAAAGTGACTGTGAGTACGAATGCATGATGACAAG 299
Query 865 agaagaagaaagaaaaagaaacggagagagaCCTACCAAGTATTTCGGTAAATGGCCACT 924
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 AGAAGAAGAAAGAAAAAGGAACGGAGAAAGACCTACCAAGTATTTCGGTAAATGGCCACT 359
Query 925 CAAACATGTCTACGGAATTCAGGAACCTGTCTCTGTTGCTTTCTCTGCTCTGGATCTTGC 984
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 360 CAAACATGTCTACGGAATTCAGGAACCTGTGTCTGTTGCTTTCTCTGCTCTCGACCTTGC 419
Query 985 AATGCAGTTTCAAGGATGGGTCTCATATTTCATCCTCGTTTACTATAAATTGCCTCTCCA 1044
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATGCAATTCCAAGGATGGGTCTCATATTTCATCCTCGTTTACTATAAATTGCCTCTCCA 479
Query 1045 GCCAAATCGGAAAACGTACTACGAGTACAATGGAATAGTGCATATCTACGCCATCATTGT 1104
|||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| ||
Sbjct 480 GCCAAATCGGAAAACGTACTACGAGTACAACGGATTAGTGCATATCTATGCCATCATCGT 539
Query 1105 AATGAATTCACTCTTCTGGAGTAGTATTTGTCATAGCAGAGATGTTGAATTGACGGAGAG 1164
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 540 AATGAATTCACTCTTCTGGAGTAGTATTTGTCATACCAGAGATGTTGAATTGACGGTGAG 599
Query 1165 GCTAGATTACTCTTCAGCTACTGTATTAGCCGGATTTTCGCTTATTCTAGCAATACTCCG 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 600 GCTAGATTACTCTTCAGCTACTGTATTAGCCGGATTTTCGCTTATTCTAGCAATACTTCG 659
Query 1225 GTCCTTCAGTATTCAAGATCAATCTGTCAAAATCATGGTTACTGCACCTATTCTTGCGGT 1284
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTCTTTCAGTATTCAAGATCAATCTGTCAAAATCATGGTTACTGCACCTATTCTTGCGGT 719
Query 1285 TGTTGCAACTCATATTCTCTACCTTAATTTCTACAACCTCGATGAAGGGCTTCACTGGAA 1344
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 TGTTGCAACTCATATTCTCTACCTAAATTTCTACAACCTCGATGAAGGGCTTCACTGGAA 779
Query 1345 AGTTATATTCGGGATTGGAGGAATAGAGCTAGTAGTATGGGGATTATGGGCGGCTTTAAC 1404
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 AGTTATGTTCGGGATTGGAGGAATAGAGCTAGTAGTGTGGGGATTATGGGCGGCTTTAAC 839
Query 1405 GTCACATCCATCAAAGTGGAAGCTAAGAGCTTTCTTGATCTCGAGCATACTCACATTGTG 1464
||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct 840 GTCTCATCCATCGAAGTGGAAGCTAAGAGCTTTCTTCATCTCGGGCATACTCACATTATG 899
Query 1465 TCTTAGAATGTTCGACTTCCCTCCGTACAAAGGCTACATCGATGCTCATGCTCTTTGGCG 1524
|||||||||| |||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 900 TCTTAGAATGCTCGATTTCCCTCCATACAAAGGCTACGTCGATGCTCATGCTCTTTGGCG 959
Query 1525 CGGTGCAGGGATTCCTCTTTCTTACCTTTGGTGGAGTTTCGTCTGCGATGACGCAGTTTT 1584
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGGCGCAGGGATTCCTCTTTCTTACCTTTGGTGGAGTTTCGTCTGCGATGACGCAGTTTT 1019
Query 1585 CAGAACCACCGTTAATCTCAAGAAATCCAAGTGATCATGAACAAATGATACAAAAGTCT 1643
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1020 CAGAACCACCGTTAATCTCAAGAAATCCAAGTGAT---GAA-AAATGATACAAAAGTCT 1074
Score = 169 bits (91), Expect = 9e-41
Identities = 105/112 (94%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 300 GTTTTTGGTAATCGGATGGCGCGAAATCTGCCATGGGTTCTGCTTATTATTGTGGTATCG 359
|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |
Sbjct 7 GTTTTTGGTAATCGGATGGCGCGAAATCCGCCATGGGTTCTGCTTATTGTTGTGGTCTGG 66
Query 360 TGTCTTGTTTCAACACTTGAAGCTAGTGAAGGAGATTCTGATTCTCTTTACA 411
|||||||||||||| |||||||||||||| |||||||||||| |||||||||
Sbjct 67 TGTCTTGTTTCAACGCTTGAAGCTAGTGATGGAGATTCTGATCCTCTTTACA 118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76675663185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5