BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62140.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496390 jgi|Araly1|496390|fgenesh2_kg.8__2206__AT5G62140.1 1181 0.0
> Ahg496390 jgi|Araly1|496390|fgenesh2_kg.8__2206__AT5G62140.1
Length=756
Score = 1181 bits (639), Expect = 0.0
Identities = 726/766 (95%), Gaps = 13/766 (2%)
Strand=Plus/Plus
Query 3 GAGAAACATGGCTTCAACAAAAATAAACTCTTTAACAACAACAATCTACAATTACAAATC 62
||||||||||| |||||||||||||||| | || |||||||| | | ||||||||
Sbjct 1 GAGAAACATGGTTTCAACAAAAATAAACCCATT---AACAACAA--T-C---TACAAATC 51
Query 63 CCCAAGAAGATACATTAACCACAAATCCCAAAACCAAATCAAACTAATTTCAAATTCCCT 122
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 CCCAAAAAGATACATTAACCACAAATCCCAAAACCAAATCAAACTAATTTCAAATTCCCT 111
Query 123 AAACCCAAAACCCAACACAACACAGCTTCCCAACACTCTCTACAGTGTCAGCTTCAAGAC 182
|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 112 AAACCCAAAACCCACCACAACACAGCTTCCCAATAATCTCTACAGTGTCAGCTTCAAGAC 171
Query 183 TATTGGAACAGGTAAGCTTGGCATCTCCAGATATCCCGATTTCGAATACTCTCCTCTAGG 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 172 TATTGGATTAGGTAAGCTTGGCATCTCCAGATATCCCGATTTCGAATACTCTCCTCAAGG 231
Query 243 TGGCTCTGGTGCCGGAACCGCCAAGAAAATCGACGACAAAAACAGAGCATCAAACTCTGA 302
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TGGCTCCGGTGCCGGAACCGCCAAGAAAATCGACGACAAAAACAGAGCATCAAACTCTGA 291
Query 303 ATTGTCTGTTTGTTTCAATGTGGCCACTCTTTATATTCCTTCTCTCACTAGCCAAACCAC 362
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 292 ATTGTCAGTTTGTTTCAATGTGGCCACTCTGTATATTCCTTCTCTCACTAGCCAAACCAC 351
Query 363 GAAGTTTCTCGGCTTTCCATTGCCACCGTTTCTAAAAATCGATATCTCACCGGAGATTTT 422
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 352 GAAGTTTCTCGGCTTTCCATTGCCACCGTTTCTAAGAATCGATATCTCACCGGAGATTTT 411
Query 423 CCAAGGAACTATCAACCAAGAATCCGGGAAGGTGGAATTGGAGTTTATGGCGAAGTTCTT 482
||| ||||||||| | ||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 412 CCAGGGAACTATCGATCAAGAATCCGGGAAGGTGGAATTAGAGTTCACGGCGAAGTTCTT 471
Query 483 TTTCACGGCGGGAGGAGGGATATACAGAGCTCCGGCGTTGGTGGTGAGAACTGTGTTGAC 542
|||||||||||||||||||||||||||||||||||||||||| || | |||| |||||||
Sbjct 472 TTTCACGGCGGGAGGAGGGATATACAGAGCTCCGGCGTTGGTTGTTAAAACTCTGTTGAC 531
Query 543 GACGGAGGAATCGATAGGAGAGAAC-AAGAGAGGGAAAGGAGAGAGACTGGACGAAGAAG 601
|||||||||||||||||||| | || ||||||||||||||||||||| ||||||||||||
Sbjct 532 GACGGAGGAATCGATAGGAGTG-ACAAAGAGAGGGAAAGGAGAGAGAATGGACGAAGAAG 590
Query 602 GAAAGTGTAGACTCGTCGGCGTCGCGAAAGTTGAGACCA-TCGACGATTTGTTTATGAAC 660
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 591 GAAAGTGTAGACTCGTCGGCGTCGCGAAAGTTGAGA-CAGTCGACGATTTGTTTATGAAC 649
Query 661 ACGTTCCTCTCTCTTCCGGCGGAGTGTCTCGCCGATCTACAAGCTATTATTTCAGTCTCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ACGTTCCTCTCTCTTCCGGCGGAGTGTCTCGCCGATCTACAAGCTATTATTTCAGTCTCT 709
Query 721 GATAATCAATCTTGAATCTTAATGATAAACCATAAATATTTGAGTT 766
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 710 GATAATCAATCTTGAATCTTAATGATAAAGCATAAATATTTGAGTT 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5