BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G62150.1

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg950979 jgi|Araly1|950979|scaffold_802866.1                        569    5e-162
  Ahg889612 jgi|Araly1|889612|Al_scaffold_0007_1598                    143    1e-33 


> Ahg950979 jgi|Araly1|950979|scaffold_802866.1
Length=349

 Score =  569 bits (308),  Expect = 5e-162
 Identities = 335/348 (96%), Gaps = 1/348 (0%)
 Strand=Plus/Plus

Query  67   tttttATAAATT-AAAGGCATGAGAGGTTCAAGAACAGGTTCTTCAGACATGAGTGCTTG  125
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2    TTTTTATAAATTAAAAGGCATGAGAGGTTCAAGAACAGGTTCTTCAGACATGAGTGCTTG  61

Query  126  GTGTTCTGCTGTTGTGTTATTGTCTTTAATACTTTTGTTATCTGTTCGTGAAAACAACGC  185
            |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct  62   GTGTTCTGCTGTTGTGTTGTTGTCTTTAATACTTTTGTTATCCGTTCGTGAAAACAACGC  121

Query  186  TTCTAATTCGATTAGAGGTTCTCAATTCTCAACGAAACCTTGTGAGGAGATTTACATCGT  245
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct  122  TTCTAATTCGATTAGAGGGTCTCAATTCTCAACGAAACCTTGTGAGGAGATTTACGTCGT  181

Query  246  CGGAGAAGGAGAGACACTTCACACCATCGGCGATAAATGCGGCGACCCGTTTATCGTGGA  305
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct  182  CGGAGAAGGAGAGACACTTCACACCATCGGCGATAAGTGCGGCGACCCATTTATCGTGGA  241

Query  306  GCGAAACCCGCATATCCATGATCCCGATGATGTCTTTCCAGGTCTTGTTCTCAAGATCGC  365
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct  242  GCGAAACCCGCATATCCATGATCCGGATGATGTCTTTCCAGGTCTTGTTCTCAAGATTGC  301

Query  366  ACCTTTTTACTTCAACAGGAAATTGTAAGACATATAACAAATACGttt  413
            |||||||||||||  ||| |||||||||||||||||||||| ||||||
Sbjct  302  ACCTTTTTACTTCTCCAGAAAATTGTAAGACATATAACAAAAACGTTT  349


> Ahg889612 jgi|Araly1|889612|Al_scaffold_0007_1598
Length=345

 Score =  143 bits (77),  Expect = 1e-33
 Identities = 111/127 (87%), Gaps = 4/127 (3%)
 Strand=Plus/Plus

Query  226  TGTGAGGAGATT-TACATCGTCGGAGAAGGAGAGACACTTCACACCATCGGCGATAAATG  284
            ||||||||| || ||| | || || |||||||| || ||||||| |||| |||| |||||
Sbjct  187  TGTGAGGAG-TTATACGTAGTAGGGGAAGGAGATACGCTTCACAGCATCAGCGAAAAATG  245

Query  285  CGGCGACCCGTTTATCGTGGAGCGAAACCCGCATATCCATGATCCCG-ATGATGTCTTTC  343
            |||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
Sbjct  246  CGGCGACCCGTTTATCGTGGAGCGTAACCCGCATATCCATGA-CCCGGATGATGTCTTCC  304

Query  344  CAGGTCT  350
            | |||||
Sbjct  305  CGGGTCT  311



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19268572445


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5