BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62160.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg917969 jgi|Araly1|917969|Al_scaffold_0008_2720 1663 0.0
> Ahg917969 jgi|Araly1|917969|Al_scaffold_0008_2720
Length=1071
Score = 1663 bits (900), Expect = 0.0
Identities = 1015/1071 (95%), Gaps = 6/1071 (1%)
Strand=Plus/Plus
Query 1 ATGAGTAGATTCCGTAAAACCCTAGTTTCTGCTTTCGTTCTCTGCTTGGTTATTTTTCCT 60
|||||||||||||| |||||||||||||| ||||||||||||| |||||||||| | |||
Sbjct 4 ATGAGTAGATTCCGAAAAACCCTAGTTTCGGCTTTCGTTCTCTACTTGGTTATTCTACCT 63
Query 61 CTTCTAGTCTCAGCGGCAGAGGAAGAAAACCAATGCGGCGGATCCAAAGGTGGCTCTGCT 120
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 64 CTTCTAGTCTCAGCGGCAGAGGAAGAAAACGAATGCGGCGGATCCAAGGGTGGCTCTGCT 123
Query 121 GCGGAGAAAGCATCGGCTCTTAAATACAAGATCATAGCTTTCTTTTCCATCTTAATCGCC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 124 GCGGAGAAAGCATCGGCTCTTAAATACAAGATCATAGCTTTCTTTTCCATCTTATTCGCC 183
Query 181 GGAGTATTTGGCGTCTGTTTACCTATTTTTGGCCTCAAGACGGAGAGCAATTTCTTCATG 240
||| |||||||||| |||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 184 GGAATATTTGGCGTTTGTTTACCTATTTTTGGCCTCAAGTCGGAGAGCAACTTCTTCATG 243
Query 241 TACGTGAAGGCATTCGCTGCCGGCGTAATTCTAGCCACCGGCTTTGTCCACATTCTTCCC 300
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 244 TTCGTGAAGGCATTCGCTGCCGGCGTAATCCTAGCCACCGGTTTTGTCCACATTCTTCCC 303
Query 301 GATGCTACCGAGAGTCTCACGAGTTCGTGCCTTGGAGAAGAACCACCGTGGGGAGATTTT 360
|||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||
Sbjct 304 GATGCTACCGAGAGTCTCACGAGTCCGTGCCTTGGAGAAGAGCCACCGTGGGGGGATTTT 363
Query 361 CCGATGACGGGACTCGTTGCCATGGCTGCATCGATCTTGACAATGTTGATTGAATCCTTT 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 364 CCGATGACGGGACTCGTTGCTATGGCTGCATCGATCTTGACAATGTTGATTGAGTCCTTT 423
Query 421 GCTTCAGGGTATTTGAACAGATCTCGCTTGGCGAAAGAGGGTAAGACTCTGCCGGTGAGT 480
||||||||||||||||| |||||||| |||| ||| ||| |||||||| |||||||||||
Sbjct 424 GCTTCAGGGTATTTGAATAGATCTCGGTTGGAGAAGGAGAGTAAGACTTTGCCGGTGAGT 483
Query 481 ACAGGCGGAGA---GGAGGAACATGCTCACACTGGCTCTGCTCATACTCATGCCTCACAA 537
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 484 ACAGGCGGAGATAAGGAGGAACATGCTCATACTGGCTCTGCTCATACTCATGCCTCACAA 543
Query 538 GGACATTCTCATGGCTCTCTTCTTATTCCCCAAGATGATGATCACATTGATATGAGGAAA 597
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 544 GGACATTCTCATGGCTCTCTTCTTATTCCCCAAGATGAT---CACATTGATATGAGGAAG 600
Query 598 AAGATTGTAACTCAGATATTGGAATTGGGGATTGTGGTTCATTCAGTGATAATAGGAATA 657
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 AAGATTGTAACTCAGATATTGGAATTGGGGATTGTGGTTCACTCAGTGATAATAGGAATA 660
Query 658 TCTCTAGGAGCATCTCCAAGTGTGAGCACAATAAAGCCTCTCATAGCTGCAATTACTTTC 717
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 661 TCTCTAGGAGTTTCTCCAAGTGTAAGCACAATAAAGCCTCTCATAGCTGCAATTACCTTC 720
Query 718 CATCAATTGTTTGAAGGTTTTGGCCTTGGTGGTTGCATCTCTGAGGCAAAGTTTAGAGTA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 721 CATCAATTGTTTGAAGGTTTTGGCCTTGGTGGTTGCATCTCTGAGGCAAAGTTTAAAGTA 780
Query 778 AAGAAAATTTGGGTTATGTTGATGTTCTTTGCACTCACGGCACCAATAGGGATAGGAATT 837
|||||||||||||||||| ||||||||||||||||||| |||||| |||| || ||||||
Sbjct 781 AAGAAAATTTGGGTTATGCTGATGTTCTTTGCACTCACAGCACCACTAGGTATCGGAATT 840
Query 838 GGTATTGGAGTGGCGGAGATTTACAACGAGAATAGCCCAATGGCCCTAAAAGTTTCCGGT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 GGTATTGGAGTGGCGGAGATTTACAACGAGAATAGCCCAATGGCCCTAAAAGTGTCCGGT 900
Query 898 TTTCTTAATGCCACGGCCTCTGGAATCTTGATTTACATGGCGCTTGTTGATTTGGTAGCT 957
|||||||| || | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTTCTTAACGCTGCAGCTTCTGGAATCTTGATTTACATGGCGCTTGTTGATTTGGTAGCT 960
Query 958 CCACTTTTTATGAACCAAAAAACTCAGAGTAGTATGAAGATACAAGTAGCTTGTAGTGTA 1017
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||
Sbjct 961 CCACTTTTTATGAACCCCAAAGCTCAGAGTAGTATGAAGATACAAGTAGCTTGTAGCGTA 1020
Query 1018 TCTCTTGTTGTTGGTGCTGGTTTGATGTCTCTTTTAGCTATTTGGGCTTGA 1068
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCTCTTGTTCTTGGTGCTGGTTTGATGTCTCTTTTAGCTATTTGGGCTTGA 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5