BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62170.1
Length=2324
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950983 jgi|Araly1|950983|scaffold_802870.1 2990 0.0
> Ahg950983 jgi|Araly1|950983|scaffold_802870.1
Length=2167
Score = 2990 bits (1619), Expect = 0.0
Identities = 2026/2206 (92%), Gaps = 93/2206 (4%)
Strand=Plus/Plus
Query 55 AAAACTTGACAAAACAAAAAATGGGAAGAGACTGGTCCTGGCT---------CGGCGGAG 105
|||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AAAACTTGACTAAACAAAAAATGGGAAGAGACTGGTCCTGGCTCGGCGGAGGCGGCGGAG 60
Query 106 GGAAGAAGAAATCCTCAAGCAAGTCAAAGGAAGAAGACATCAAACCCACGCAGCCGCCAC 165
||||||||||||||||||||||||||||| |||||||||| ||| |||| | |||| | |
Sbjct 61 GGAAGAAGAAATCCTCAAGCAAGTCAAAGAAAGAAGACATTAAA-CCAC-C-GCCGTCGC 117
Query 166 CGCCGTCACTCGCCGGAAATACTGCAACGGCGGCGGGATGCATGAGTGCTGTCTTCAACA 225
|||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 118 CGCCATCTTTCGCCGGAAATACTGCAACGGCGGCGGGATGCATGAGTGCTGTGTTCAACA 177
Query 226 TTTTTGATTTTCAACATTTACAGTTTCCTATTAACCACCACCATCTTCATCTTCCCAAAG 285
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TTTTCGATTTTCAACACTTACAGTTTCCTATTAACCACCACCATCTTCATCTTCCCAAAG 237
Query 286 GCGTAGATGCACCAAGAAACAGCTTGGAATCAAC------G---GAGGAGGAAACTTCAT 336
| ||||||||||| |||||||||||||||||||| | |||||||||||| |||
Sbjct 238 GAGTAGATGCACCGAGAAACAGCTTGGAATCAACGGAGGAGACAGAGGAGGAAACTCCAT 297
Query 337 TTTCACCAACCAGAAAAGATGGAAATTTAAATATCTCTATGGGTATTAAAATCAAGACCA 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTTCACCAACCAGAAAAGATGGAAATTTAAATATCTCTATGGGTATTAAAATCAAGACCA 357
Query 397 AACCACAAGCAAGATCATCATCAGCATCTCTTACACCCACTGAAACTTACTCTCCGAGCA 456
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 358 AACAACAAGCAAGATCATCATCAGCATCTCTTACACCCACTGAAACTTATTCTCCGAGCA 417
Query 457 TAAAGACACCTACTTTGGTTGCTAGACTCATGGGTCTTGATCTTGTTCCTGATAATTACA 516
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TAAAGACACCAACTTTGGTTGCTAGACTCATGGGTCTTGATCTTGTTCCTGATAATTACA 477
Query 517 GATCATCTCCTACTCCATCTTCGTCATCTTCTTCTACCTTAATTGATCTCAAGACACCAA 576
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 478 GATCATCTCCTACTCCATCTTCTTCATCTTCTTCTACCTTAATTGATCTCAAGACGCCAA 537
Query 577 CAAGATCTTCTCACGCAAAGAAACACAGACATTATTCTCTCCAAAGAAACTCTGTCGACG 636
|||||||||||||||| || |||||||||||||| |||||||||||||||||| ||||||
Sbjct 538 CAAGATCTTCTCACGCCAACAAACACAGACATTACTCTCTCCAAAGAAACTCTATCGACG 597
Query 637 GAGGCACACGTTCTCTTCCCGAGACACCGAGGATTTCACTTGGAAGGAGATCCGTTGATG 696
|||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 598 GAGGTACACGTTCTCTTCCCGAAACACCGAGGATTTCACTCGGAAGGAGATCCGTTGACG 657
Query 697 TCAACTGTTACGAACACCAACGTTCTTCACTTCATCTCAGAG------ACAACAACATCA 750
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 658 TCAACTGTTACGAACACCAACGTTCTTCACTTCATCTCAGAGACAACAACAACAACAGCA 717
Query 751 ACGTGTTTCCTGAAAGAGAATCTGGTATTAACAATGTCAGGCTCACGAGGGTC--A-A-A 806
|||||||||| |||||||| ||||||||||||||||||||||||| |||||| | | |
Sbjct 718 ACGTGTTTCCCGAAAGAGAGGCTGGTATTAACAATGTCAGGCTCACAAGGGTCAAAGAGA 777
Query 807 -G-AGATACACGAAGATAAAGAGAATCGGAGTCCACGAGAGTATGCTAGACAGATAGTGA 864
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 778 TGAAGATACATGAAGATAAAGAGAATCGGAGTCCACGAGAGTACGCTAGACAGATAGTAA 837
Query 865 TGCAGTTGAAGGAGAACGTTAGCCGAAGAAGAAGAATGGGAACTGATATAACCAACAAAG 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TGCAGTTGAAGGAGAACGTTAGCCGAAGAAGAAGAATGGGAACTGATATAACCAACAAAG 897
Query 925 AAAC-ACAACCAAGAGAGGTTCATGAGTCCAAGAAAGCTTCTTCTAAG---ACCACAATC 980
||| |||| |||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 898 -AACAACAATCAAGAGAGATTCATGAGTCCAAGAAAGCTTCTTCTAAGATTACAACAATC 956
Query 981 ATCACTCATGATGT-ATCATCATCCCCGAGATTGGGATTAACGGAAGTCCCCAAAACAAA 1039
|||||||||||| | ||||||||||||||||| |||||||| ||| |||||||||| ||
Sbjct 957 ATCACTCATGAT-TCCTCATCATCCCCGAGATTAGGATTAACAGAAATCCCCAAAACCAA 1015
Query 1040 ACCAACCTCACTTCAGACAAATAATGTCGCTTCCAAGATTCTGGA-AACAACAGCAATGA 1098
||||| ||||| ||||||||||||||| ||| ||||||||||||| || |||| || |||
Sbjct 1016 ACCAAACTCACCTCAGACAAATAATGTTGCTACCAAGATTCTGGAGAA-AACAACAGTGA 1074
Query 1099 AGGTTCAAGACAAGACCAGGTTACCAACAGTGCATGAAGAG-C-C-------ACAAGG-- 1147
||||||||||||||||||| ||| |||||| ||| |||||| | | ||||||
Sbjct 1075 AGGTTCAAGACAAGACCAGATTATCAACAGCGCAAGAAGAGCCACAGGGAGAACAAGGAC 1134
Query 1148 AAC-AGAGAAAGAAAAACAGAGGAAATCTACAAAGAAATGCAAGAAACCAGAGAATTTCA 1206
||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1135 AACAAGTGAAAGAAAAACAGAGGAAGTCTACAAAGAAATGCAAGAAACCAGAGAATTTCA 1194
Query 1207 AGTCGAGATTAGTGAAGCCGCCACA-ATCAATGCAGGAAGAGCCGTTTGTTCGATCACCA 1265
||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| |
Sbjct 1195 AGTCGAGATTAGTGAAGCCGCCACAGA-CAATGCAAGAAGAGCCGTTTGTTCGATCA-C- 1251
Query 1266 GCAATAaacaa-cagcaacaacaacaacaaTGGTCATCTACTTCTTATCCAAGGAGACAA 1324
| || ||||| | |||||| ||||||||||||| | | |||||||| |||||||||||
Sbjct 1252 -C-ATTAACAAGTAACAACAAGAACAACAATGGTC-T-T-CTTCTTATTCAAGGAGACAA 1306
Query 1325 ATCTTCCA-GCAAGAAAACTCCTTTATCCATTAATCATCTCATCAACTTCACCAGTGTTC 1383
||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1307 ATCTT-CATGCAAGAAAACTCCTTTATCCATTAATCATCTCATCAACTTCACTAGTGTTC 1365
Query 1384 CCACCATCAAGAAGAAAGATTCA-CAACCTCATCACAAATCGTCAAACTTAAAGCTCAGA 1442
||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||
Sbjct 1366 CCACCATCAAGAAGAAAGATTCATC-ACTTCATCACAAATCGTCAAACTTAAAGCTCAGA 1424
Query 1443 GAAACACAAACACCAAGAAACAGAGCATCATCATCAGAGCTCCCTAGTTTTCCGAGCCAA 1502
||||||||||||||||||||||||| ||||||||||| | |||||||| |||||
Sbjct 1425 GAAACACAAACACCAAGAAACAGAG---CATCATCAGAGATTCCTAGTTTCCCGAG---- 1477
Query 1503 TCACAACACCACATTGCACCAATCGCCGGCGGCGAATTAGAGTACATAACAAGAACCCTA 1562
| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1478 ---------C-C----CACCAATCGCCGGCGGCGAGTTAGAGTACATAACAAGAACCCTA 1523
Query 1563 AGAAGAACAGGAATCGACAGAGACACACCAATCTCATACGCTAAATGGTTCTCTCCTTCA 1622
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 AGACGAACAGGAATCGACAGAGACACACCAATCTCATACGCTAAATGGTTCTCTCCTTCA 1583
Query 1623 CACCCACTTGATCCATCAATCTTCTACTTCCTCGAACATTTCGCTGTTACATCAACCAGA 1682
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 CACCCACTCGATCCATCAATCTTCTACTTCCTCGAACATTTCGCTGTTACATCAACCAGA 1643
Query 1683 CCTAGAAATTCACCGGAAAATCTCTCTCTTCGATGCAATAGAAAGCTACTCTTCCACTTA 1742
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1644 CCTAGAAACTCACCGGAAAATCTAGCTCTTCGATGCAATAGAAAGCTACTCTTCCACTTA 1703
Query 1743 GTAGACGAAATCCTCGCCGATATCTTAAAGCCACACATAAATTTGAAACCTTGGGTTTGC 1802
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1704 GTAGACGAAATCCTCGCCGATATCTTAAAGCCACACATCAATTTGAAACCTTGGGTTTGC 1763
Query 1803 CATTACCCGATTCGGTCTCAGAGGAATCTAAAGGGATCGGAGCTAATCGACGAGTTATCT 1862
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 CATTACCCGATTCAATCTCAGAGGAATCTAAAGGGATCGGAGCTAATCGACGAGTTATCT 1823
Query 1863 CGGAGAATCGAGCGGTTTCCGTTAGCA-AAGTGTTTGGTTCTAGAAGATATCGACGCTCT 1921
||||||||||||||||||||||||||| || ||||||||||| ||||| || || |||||
Sbjct 1824 CGGAGAATCGAGCGGTTTCCGTTAGCAGAA-TGTTTGGTTCTCGAAGACATTGATGCTCT 1882
Query 1922 CGTCGCCGGGGACTTCCCGGAGATTGAATCGGCGTTTGAAGAAGACGGCGAAGGAATCGT 1981
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 CGTCGCCGGAGATTTCCCGGAGATTGAATCGGCGTTTGAAGAAGACGGCGAAGGAATCGT 1942
Query 1982 CACGGAGATCGAGAGAGGAATCTTTGAAACACTCGTGACTGAAACGACGACGGATTA-TT 2040
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1943 CACGGAGATCGAGAGAGGAATCTTGGAAACACTCGTGACTGAAACGACGACGGATTGCTT 2002
Query 2041 TAGCCACGTGGATGGTCAAAACGGCGCCGCTGAAACGTAACGATGATGTCAGTGGCACGT 2100
| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 2003 T-GCCACGTGGATGGTCAAAACGGCGCCGCTTAAGCGTAACGATGATGTCAGTGGCACGT 2061
Query 2101 GGGGTGTTCACGTGACGAGATACTCTACAAATGTGGGGTCCCACCACGACTCGTCCTCAT 2160
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2062 GGGGTGTTCACGTGACGAGATACTCTTCAAATGTGGGGTCCCACCACGACTCGTCCTCTT 2121
Query 2161 TGAGATTAAGGCTTCCACGTGGATAAAAGAATTCCACATGGCAGAC 2206
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2122 TGAGATTAAGGCTTCCACGTGGATAAAAGAATTCCACATGGCAGAC 2167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87531383010
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5