BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62180.1
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496395 jgi|Araly1|496395|fgenesh2_kg.8__2211__AT5G62180.1 1387 0.0
> Ahg496395 jgi|Araly1|496395|fgenesh2_kg.8__2211__AT5G62180.1
Length=1000
Score = 1387 bits (751), Expect = 0.0
Identities = 912/989 (92%), Gaps = 13/989 (1%)
Strand=Plus/Plus
Query 16 CCAATCGCTGATCCTTATGCTTATCTTAACATCGTAAATAATCCAGATGGTTCAATCACT 75
|||||| |||||||||| ||||| |||||||||||||| |||||||||||||||||||||
Sbjct 19 CCAATCTCTGATCCTTACGCTTACCTTAACATCGTAAAAAATCCAGATGGTTCAATCACT 78
Query 76 CGCGACCTCAGCAACTTCCCCTGCACCGCAGCTACACCTGATCCTTCCCCACTAAACCCC 135
|||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||
Sbjct 79 CGCGACCTCACCAACTTCCCATGCGCCGCAGCTACACCTGATCCTTCCCCACAAAACCCC 138
Query 136 GCCGTTTCAAAAGATCTTCCCGTTAACCAATTAAAGTCAACGTGGCTCCGTCTCTACCTT 195
||||||||||||||||||||||| ||||| | ||| |||||||||||||||||||| |||
Sbjct 139 GCCGTTTCAAAAGATCTTCCCGTGAACCACTCAAATTCAACGTGGCTCCGTCTCTATCTT 198
Query 196 CCCTCCTCCGCCGTCAACGAGGGTAACGTTTCGTCTCAGAAACTCCC-CATTGTTGTGTA 254
||||| |||||||| ||||| || ||||||||||||||||||||| | | ||||||||
Sbjct 199 CCCTCTTCCGCCGTAAACGACGG---CGTTTCGTCTCAGAAACTCCCTC-TCGTTGTGTA 254
Query 255 TTACCATGGCGGAGGATTCATCCTCTGCAGCGTCGATATGCAACTCTTCCACGATTTCTG 314
||| || ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||
Sbjct 255 TTATCACGGCGGAGGATTCATCCTATGCAGCGTCGATATGCAACCCTTTCACGATTTCTG 314
Query 315 CTCCGAGGTGGCTCGTGATCTCAACGCCATCGTCGTATCTCCTTCGTACCGATTAGCTCC 374
||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 315 CTCCGAGATGGCTCGTGATCTCAACGCGATCGTCGTATCTCCCTCGTACCGGTTAGCTCC 374
Query 375 AGAGCATCGATTACCGGCGGCGTATGACGACGG-AGTTGAGGCGT-TGGATTGGATTAAA 432
||||| ||||||||||||||||| |||||||| | | || || | |||| |||||| ||
Sbjct 375 GGAGCACCGATTACCGGCGGCGTACGACGACGGTA-TGGAAGC-TCTGGAGTGGATTCAA 432
Query 433 ACCTCCGACGATGAGTGGATCAAATCTCACGCCGATTTCTCAAATGTGTTTCTTATGGGA 492
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 433 ACCTCCGACGATGAGTGGATCAAATCTCACGCCGATTTCTCAAAGGTGTTCCTTATGGGA 492
Query 493 ACTAGCGCCGGAGGGAATTTGGCTTACAACGTCGGACTAAGATCCGTC-GATTCCGTCTC 551
||||||||||||||||| |||||||||||||||||||||||||| | | |||||||||||
Sbjct 493 ACTAGCGCCGGAGGGAACTTGGCTTACAACGTCGGACTAAGATCGG-CAGATTCCGTCTC 551
Query 552 CGATCTGAGTCCGTTACAGATCCGTGGATTGATTCTACACCATCCATTCTTCGGCGGAGA 611
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 552 CGATCTGAACCCGTTACAGATCCGTGGATTGATTCTACACCATCCGTTCTTCGGCGGAGA 611
Query 612 AGAGCGAAGTGAATCTGAGATTAGACTTATGAACGATCAGGTTTGTCCTCCCATAGTCAC 671
||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 612 AGAACGATGTGGATCTGAGATTAGACTTGTGAACGATCAGGTTTGTCCTCCCATAGTCAC 671
Query 672 CGATGTAATGTGGGATCTGTCTCTTCCCGTCGGCGTTGACCGAGATCATGAGTATTCGAA 731
||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 672 CGACGTAATGTGGGATCTGTCTCTTCCCGTGGGCGTTGACCGGGATCATGAGTATTCGAA 731
Query 732 TCCGACGGTTGGAGATGGATCGGAGAAGTTGGAAAAAATCGGACGGTTGAGATGGAAAGT 791
||||||||| ||||||||||||||| | ||||| ||||||||| ||||||||||||||||
Sbjct 732 TCCGACGGTGGGAGATGGATCGGAGGATTTGGAGAAAATCGGAGGGTTGAGATGGAAAGT 791
Query 792 GATGATGATTGGAGGAGAGGATGATCCGATGATAGATCTGCAGAAAGATGTGGCAAAGCT 851
||||||||| ||||||||||||||||| |||||||||| ||||| ||||||||| |||||
Sbjct 792 GATGATGATCGGAGGAGAGGATGATCCAATGATAGATCGGCAGATAGATGTGGCTAAGCT 851
Query 852 GATGAAGAAGAAAGGAGTAGAAGTGGTGGAGCATTATACCGGCGGCCATGTTCACGGTGC 911
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 852 GATGAAGAAGAAAGGAGTAGAAGTGGTGGAGCATTATACCGTCGGCCATGTTCACGGTGC 911
Query 912 TGAAATCAGAGATCCTTCTAAACGTAAAACTCTGTTTCTTTCCATCAAAAACTTCATATT 971
||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 912 TGAGATCGGAGAACCTTCTAAACGTAAAACTCTCTTTCTTTCCATCAAAAACTTCAT-TT 970
Query 972 C-TCTGTTCTGTAACtttttttttttttt 999
| ||| || ||||||||||||||||||||
Sbjct 971 CCTCTCTTGTGTAACTTTTTTTTTTTTTT 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37398581577
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5