BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62190.1
Length=2384
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496396 jgi|Araly1|496396|fgenesh2_kg.8__2212__AT5G62190.1 3496 0.0
Ahg950092 jgi|Araly1|950092|scaffold_801979.1 176 6e-43
Ahg945676 jgi|Araly1|945676|scaffold_701905.1 176 6e-43
Ahg931085 jgi|Araly1|931085|scaffold_303542.1 172 8e-42
> Ahg496396 jgi|Araly1|496396|fgenesh2_kg.8__2212__AT5G62190.1
Length=2358
Score = 3496 bits (1893), Expect = 0.0
Identities = 2221/2375 (94%), Gaps = 39/2375 (2%)
Strand=Plus/Plus
Query 8 TTTGTCGTCTCTCCCTGCTTTCGCAC-TTC-ATAGCCTCAATCTCTCAACAAGCAGAAGA 65
|||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||
Sbjct 1 TTTGTCGTCTCTCCCTGCTTTCGCACTTTCAATAGCCTCAATCTCTCAAAAAGCAGAAGA 60
Query 66 GATTCGATTCTCCATTATCTTCCTTCTAAATGCCTTCCCTAATGTTATCTGATaagaaag 125
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GATTCGATTCTCCATTATCTTCCTTCTAAATGCCTTCACTAATGTTATCTGATAAGAAAG 120
Query 126 aggagaagaagatgaagaagaagaTGGCTTTGGATACCCCAGAGCTTGATTCTAAGAAGG 185
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 AGGAGAAGAAGATGAAGAAGAAGATAGCTTTGGATACCCCAGAGCTTGATTCTAAGAAGG 180
Query 186 GGAAGAAGGAGCAGAAGCTGAAACTATCTGATTCGGATgaagaagagtcggagaagaaga 245
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 GGAAGAAGGAGCCGAAGCTGAAACTATCTGATTCTGATGAAGAAGAGTCGGAGAAGAAGA 240
Query 246 agagtaagaagaaggataagaagcgtaaggcttccgaggaggaggatgaagtgaagaGCG 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAGTAAGAAGAAGGATAAGAAGCGTAAGGCTTCCGAGGAGGAGGATGAAGTGAAGAGCG 300
Query 306 ATTCAAGCTCGGAGAAGAAGAAGAGCAGCAAGAAGGTTAAGTTGGGCGTTGAGGATGTTG 365
|||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 301 ATTCGAGCTCGGAGAAGAAGAAGAGCAGCAAGAAGGTTAAGTTGGGTGTTGAAGATGTTG 360
Query 366 AAGTTGATAACCCTAATGCTGTTTCTAAGTTTCGGATTTCTGCGCCTTTGAGGGAGAAGC 425
|||||||||||||||||||| |||| || |||||||||||||| || |||||||||||||
Sbjct 361 AAGTTGATAACCCTAATGCTATTTCCAATTTTCGGATTTCTGCTCCGTTGAGGGAGAAGC 420
Query 426 TTAAGGCGAATGGTATTGAAGCTCTTTTCCCGATTCAGGCTTCCACGTTTGATATGGTTC 485
|||||||||| |||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 421 TTAAGGCGAAGGGTATTGAAGCTCTTTTCCCGATTCAAGCTACAACTTTTGATATGGTTC 480
Query 486 TCGATGGTGCTGATTTAGTTGGACGGGCTCGTACTGGTCAGGGTAAAACATTGGCTTTTG 545
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 481 TCGATGGTGCTGATTTAGTTGGACGTGCTCGTACTGGTCAGGGTAAAACATTGGCTTTTG 540
Query 546 TGTTGCCTATATTGGAATCTTTGGTTAATGGACCTGCCAAAAGCAAAAGGAAGATGGGAT 605
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 541 TGTTGCCTATATTGGAATCGTTGGTTAATGGACCTGCCAAAAACAAAAGGAAGATGGGAT 600
Query 606 ATGGCAGGTCACCAAGTGTTTTGGTCCTTTTACCGACCAGAGAATTGGCCAAGCAGGTGG 665
||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATGCCAGGGCACCAAGTGTATTGGTCCTTTTACCGACCAGAGAATTGGCCAAGCAGGTGG 660
Query 666 CTGCTGACTTTGATGCATATGGAGGATCACTTGGGTTAAGTTCATGTTGTCTCTATGGAG 725
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 CTGCTGACTTTGATGCATATGGAGGATCACTTGGGTTAAGTTCATGTTGTATCTATGGAG 720
Query 726 GTGATAGCTATCCAGTTCAGGAGGGTAAATTAAAGAGAGGTGTTGACATTGTAGTTGGAA 785
||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 721 GTGATAGCTATACAGCTCAGGAGAATAAATTAAGGAGAGGTGTTGACATTGTAGTTGGAA 780
Query 786 CCCCTGGTCGTATTAAGGATCATATTGAAAGACAAAACCTTGATTTCAGCTATTTACAAT 845
|||||||||||||||||||||||||||| ||||||||| ||||| ||||| || | ||||
Sbjct 781 CCCCTGGTCGTATTAAGGATCATATTGAGAGACAAAACATTGATCTCAGCCATCTGCAAT 840
Query 846 TCCGTGTTCTTGATGAAGCTGATGAAATGTTGAGGATGGGATTTGTTGAGGATGTTGAAC 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCCGTGTTCTTGATGAAGCTGATGAAATGTTGAGGATGGGATTTGTTGAGGATGTTGAAC 900
Query 906 TTATTTTAGGGAAAGTGGAGGATTCTACTAAAGTCCAGACTCTTCTCTTCAGTGCTACTT 965
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 TTATATTAGGGAAAGTGGAGGATCCTACTAAAGTCCAGACTCTTCTCTTCAGTGCTACTT 960
Query 966 TGCCATCATGGGTGAAAAATATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTG 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGCCATCATGGGTGAAAAATATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTG 1020
Query 1026 ATCTTGTTGGTAATGATAAAATGAAGGCCAGTAATAGTGTTCGACACATTGCTATTCCTT 1085
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1021 ATCTTGTTGGTAATGATAAAATGAAGGCCAGTAATAGTGTTCGACACATCGCTATACCCT 1080
Query 1086 GTAATAAGGCAGCCATGGCTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAGTGGAG 1145
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GTAATAAGGCGGCCATGGCTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAGTGGAG 1140
Query 1146 GCCAAACTATTATTTTCGCTGA-AACTAAAGTTCAAGTTTCTGAGCTTTCTGGTTTGTTG 1204
||||||| |||||||||||||| || ||| | ||||||| ||||||||||||||||||
Sbjct 1141 GCCAAACCATTATTTTCGCTGAGAA-GAAAAATGAAGTTTCCGAGCTTTCTGGTTTGTTG 1199
Query 1205 GATGGATCAAGAGCCTTGCATGGTGAAATACCTCAATCACAACGTGAGGTTACTCTTGCT 1264
| ||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1200 GCTGGGTCAAGAGCCTTGCATGGTGAAATACCTCAAGCTCAACGTGAGGTTACTCTTGCT 1259
Query 1265 GGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTGCTGCTCGTGGTCTA 1324
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGATTTAGGAATGGCAAGTTTTCGACATTGGTGGCTACAAATGTTGCTGCTCGTGGTCTA 1319
Query 1325 GATATCAATGATGTGCAGTTAATTATCCAGTGTGAGCCTCCACGTGAAGTTGAAGCATAT 1384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GATATCAATGATGTGCAGTTAATTATCCAGTGTGAGCCTCCACGTGAAGTTGAAGCATAT 1379
Query 1385 ATTCATCGTTCAGGCCGAACAGGAAGAGCTGGCAACACAGGAGTTGCGGTTACACTCTAC 1444
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1380 ATTCATCGTTCAGGCCGAACAGGAAGAGCTGGCAACACTGGAGTTGCAGTTACGCTCTAC 1439
Query 1445 GATTCTAGAAAGTCGAGTGTATCCAGGATCGAAAAAGAAGCTGGTATCAAATTTGAGCAC 1504
|| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| ||
Sbjct 1440 GAGTCTAGAAAGTCGAGTGTATCAAGGATCGAAAAGGAAGCTGGTATAAAATTTGAGTAC 1499
Query 1505 CTTGCTGCACCTCAACCTGATGAAATTGCCAGATCTGGTGGTATGGAAGCTGCTGAGAA- 1563
|| |||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 1500 ATTTCTGCACCTCAGCCTGATGATATTGCCAGAGCTGTTGGTATGGAAGCTGCTGAGAAT 1559
Query 1564 AGTTAAACAAGTGTGTGACAGTGTGGTTCCTGCATTCCTTGAAGCTGCCAAGGAATTATT 1623
| ||||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1560 A-TTAAAAAAGTCTGTGACAGTGTGGTTCCTGCATTCCTGGGAGCTGCCAAGGAATTATT 1618
Query 1624 AGAAACTTCTGGTTTATCAGCTGAAGTACTCCTCGCAAAAGCTCTTGCAAAAACTGCGGG 1683
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1619 AGAATCTTCTGGTTTATCAGCTGAAGTACTCCTCGCAAAAGCTCTTGCAAAAACAGCGGG 1678
Query 1684 CTTCACTGAGATAAAGAAAAGGTCACTTCTTACATCAATGGAGAACTATGTGACACTACA 1743
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1679 CTTCACTGAGATAAAGAAAAGGTCACTTCTTACATCAATGGAGAACCATGTGACACTACA 1738
Query 1744 TCTTGAAGCAGGGAAACCAATATACTCGCCATCATTTGTTTATGGACTGCTAAGGAGAGT 1803
||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||
Sbjct 1739 TCTTGAAGCAGGGAAACCAATGTACTCGCCATCATATGTTTATGGATTGCTAAGGAGAGT 1798
Query 1804 TTTACCGGATGACAAGGTGGAA-ATGATTGAAGGGTTATCTCTAACAGCAGATAAAA-CA 1861
|||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| |
Sbjct 1799 TTTACCAGATGACAAGGTGGAACA-GATTGAAGGGTTATCTCTAACAGCAGATAAAAGC- 1856
Query 1862 GGAGCTGTGTTCGATGTTAAGCAATCAGATCTAGACTTGTTCATTGCAGGAGCACAAAAG 1921
||||| ||||| |||||||||||||| ||||||| ||||||| |||||| | |||||||
Sbjct 1857 GGAGCAGTGTTTGATGTTAAGCAATCGGATCTAGCCTTGTTCCTTGCAGCTGGACAAAAG 1916
Query 1922 AGTGCTGGAAGTATGAGTTTGGAAGTGGTTAAGGTGATGCCTAAACTCCAGGAGAGAGAA 1981
||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1917 AGTGCTGGAAGTATGAGCTTGGAAGTGGTTAAGGAGATGCCTAAACTTCAGGAGAGAGAA 1976
Query 1982 CCATTGCCACAAAAAAGATTcggtggtggtggcaga-ggaaatcggtttgg---tggtgg 2037
||||||||||||||||||| |||| | || | | ||||| |||||||| ||||||
Sbjct 1977 CCATTGCCACAAAAAAGATACGGTCGCAATG-CTGGTGGAAACCGGTTTGGAGGTGGTGG 2035
Query 2038 tggaggaaatcggtttggcggtggtggtggcagaggaagaggaggcagtggtggtAGAGG 2097
||| |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 2036 TGGTGGAAATCGGTTTGG---TGGTGGTGGCAGAGGAAGAGG------TGGTGGTAGAGG 2086
Query 2098 CCAGAGATATTGAAAACTGGAACCCAACTTCTC-CT--TTCT-ATATAAAAAGAAACTAA 2153
|||||||||||||||||| |||||||||||||| || || | ||| ||||||| |||||
Sbjct 2087 CCAGAGATATTGAAAACTCGAACCCAACTTCTCTCTCCTTTTGATAAAAAAAGATACTAA 2146
Query 2154 ACTCCGTCTTATAATTTCATTACTATCTTCTTCCGCTGATGTTTTCTACACTATAATAGG 2213
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 2147 ACTCCCTCTTATAATTTCATTACTATCTTCTTGCGCTGATGATTTCTACACTATAATAGG 2206
Query 2214 TGGCTTTTCTGTGT-TTT-CCATTTTCTTT--C---CTT-GAACAAACTTATGGAGGCTC 2265
|| |||||||||| ||| || |||| ||| | ||| ||||||||||| ||||||||
Sbjct 2207 TG--TTTTCTGTGTGTTTTCCGTTTTTTTTTTCTTTCTTTGAACAAACTTAAGGAGGCTC 2264
Query 2266 TCTTGTACCCTCTTATCAATTTTGTGTAATGTTGGATGATAATGATGATTAAATTATAAC 2325
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 2265 TCTTGTGTCCTCTTATCAATTTTGTGTAAT-TTGGATGATAATGATGATTAAATTATTAC 2323
Query 2326 TTCGTCACTCATTGGAATTGTTTTGTAAGTTTCAA 2360
||||||||| || |||||||||||||| |||||||
Sbjct 2324 TTCGTCACTAATGGGAATTGTTTTGTAGGTTTCAA 2358
> Ahg950092 jgi|Araly1|950092|scaffold_801979.1
Length=759
Score = 176 bits (95), Expect = 6e-43
Identities = 101/104 (97%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 1251 AGGTTACTCTTGCTGGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTG 1310
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 191 AGGTTACTCTTGCTGGATTTAGGAATGGCAAGTTTTCTACATTGGTGGCTACAAATGTTG 250
Query 1311 CTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATCCAG 1354
|||||||||||||||||||||||||||||||||||||||| |||
Sbjct 251 CTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATTCAG 294
> Ahg945676 jgi|Araly1|945676|scaffold_701905.1
Length=759
Score = 176 bits (95), Expect = 6e-43
Identities = 101/104 (97%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 1251 AGGTTACTCTTGCTGGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTG 1310
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 191 AGGTTACTCTTGCTGGATTTAGGAATGGCAAGTTTTCTACATTGGTGGCTACAAATGTTG 250
Query 1311 CTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATCCAG 1354
|||||||||||||||||||||||||||||||||||||||| |||
Sbjct 251 CTGCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATTCAG 294
> Ahg931085 jgi|Araly1|931085|scaffold_303542.1
Length=723
Score = 172 bits (93), Expect = 8e-42
Identities = 99/102 (97%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1253 GTTACTCTTGCTGGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTGCT 1312
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 157 GTTACTCTTGCTGGATTTAGGAATGGCAAGTTTTCGACATTGGTGGCTACAAATGTTGCT 216
Query 1313 GCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATCCAG 1354
|||||||||||||||||||||||||||||||||||||| |||
Sbjct 217 GCTCGTGGTCTAGATATCAATGATGTGCAGTTAATTATTCAG 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89816797710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5