BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62200.1
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496397 jgi|Araly1|496397|fgenesh2_kg.8__2213__AT5G62200.1 1040 0.0
> Ahg496397 jgi|Araly1|496397|fgenesh2_kg.8__2213__AT5G62200.1
Length=770
Score = 1040 bits (563), Expect = 0.0
Identities = 699/762 (92%), Gaps = 20/762 (3%)
Strand=Plus/Plus
Query 17 GCGATTTCTCGAAGCACGAAAATGGCGTCCGTACGACTCTTCTTCACTTTAATCTCCTTC 76
|||||||||||||||||||||||||||||||||||| | |||||||| | |||||||||
Sbjct 1 GCGATTTCTCGAAGCACGAAAATGGCGTCCGTACGA--C-TCTTCACTCTCATCTCCTTC 57
Query 77 GTCTTCATTATATCCACCTCTGTTTACGAATCAAAAGTATTGGATCCTCCTCACGTCGCT 136
|||||| |||||| || ||| |||| |||||||||||| ||||| ||||||||||||
Sbjct 58 GTCTTCCTTATATTCATCTCGGTTTCCGAATCAAAAGTCTTGGA---GCCTCACGTCGCT 114
Query 137 GAATCATTCAACGTTAGCCTCATCCAGAAATTGGGGAATACTTGTGCTTACACAGTGATC 196
|||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 115 GAATCATTCAACGTCAGCCTCATCCAGAGATTGGGGAATACTTGTTCTTACACAGTGATC 174
Query 197 ATCTCGACGAGCTGTTCGTCGACTAGGTACACGCGCGATCAGATCAGCGTCGCTTTCGGC 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 ATCTCGACGAGCTGTTCGTCGACTAGGTACACGCGCGATCAGATCAGCGTCGCTTTCGGC 234
Query 257 GATGGCTATGGTAACCAGATATACGCACCAAGGCTTGATGATCCATCTACAAAAACGTTT 316
||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 235 GATGGCTATGGAAACCAGATATACGCACCAAGGCTTGACGATCCATCTTCAAAAACGTTC 294
Query 317 GAGCAATGTTCATCAGATACATTTCAGATAAACGGACCATGTACATACCAGATATGCTAT 376
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 295 GAGCAATGTTCATCAGATACATTTCAGATAAACGGACCATGCACATACCAGATATGCTAT 354
Query 377 GTATATCTCTACAGGTCTGGTCCAGATGGTTGGATCCCAAACACTGTAAAGATATATAGC 436
|| |||||||| ||||||||||||||||||||||||||| ||| ||||||||||| ||||
Sbjct 355 GTGTATCTCTATAGGTCTGGTCCAGATGGTTGGATCCCAGACAGTGTAAAGATATTTAGC 414
Query 437 CATGGCTCTAAAGCGGTCACCTTCCCATATAACACATATGTTCCTGAGAGTGTATGGTAT 496
|||||||||||||||||||||||| ||||||||||| | || ||||||||||||||||||
Sbjct 415 CATGGCTCTAAAGCGGTCACCTTCTCATATAACACACACGTCCCTGAGAGTGTATGGTAT 474
Query 497 GGTTTCAATTACTGCAACAGCGCCTCAGATTCTAATGTCCTTGCCATTGGTCTCAGAAGG 556
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 475 GGTTTCAATTACTGCAACAGCGCCTCAGATTCTAATGTCCTAGCCATCGGTCTCAGAAGG 534
Query 557 AGCGTGATCATACTCCTAGGTTTTGTTGTCGCCGGTACCACATTGCTCTTGTAAGCTGTT 616
| |||||||||||||||||| |||||||| |||| ||| |||||||||||||||||||||
Sbjct 535 ATCGTGATCATACTCCTAGGGTTTGTTGTAGCCGCTACAACATTGCTCTTGTAAGCTGTT 594
Query 617 ATGTTTCCGGTTTTGTATAAACATATTAGGACTTGTGAAGAATAAATGTGTACCGTTTTG 676
||| |||||||||||||| | ||||||||||||||| |||||||||||||||||| |
Sbjct 595 ATGGTTCCGGTTTTGTATGAGCATATTAGGACTTGTAAAGAATAAATGTGTACCG----G 650
Query 677 GGGAAATGGGTCTCAGAACTGTATTAAGTATTAACCATAAATCTATGATGAAGTTACTTA 736
|||||||||||| | ||||||||| |||||||||||| |||||||| ||||
Sbjct 651 ---AAATGGGTCTCATATCTGTATTAA-------CCATAAATCTATAATGAAGTTGCTTA 700
Query 737 CTCCTAATTACAGAGTCTGTAAATCTTATGAGCAGTGTGTAT 778
|||||||||||| ||| |||||||||||||||||||||||||
Sbjct 701 CTCCTAATTACATAGTGTGTAAATCTTATGAGCAGTGTGTAT 742
Score = 56.5 bits (30), Expect = 3e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 790 ATTTGTGACAGTTCATCAACTATATATGTG 819
||||||||||||||||||||||||||||||
Sbjct 741 ATTTGTGACAGTTCATCAACTATATATGTG 770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5