BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G62210.1

Length=878
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg917976 jgi|Araly1|917976|Al_scaffold_0008_2727                    935    0.0  


> Ahg917976 jgi|Araly1|917976|Al_scaffold_0008_2727
Length=678

 Score =  935 bits (506),  Expect = 0.0
 Identities = 619/672 (92%), Gaps = 13/672 (2%)
 Strand=Plus/Plus

Query  21   CTCTCTCTCATC---CATCCTCCTTCTCCTTGTACTCTGCTTCACTCATCCCATTCCTTC  77
            ||||||||||||   ||||||| | |||||||| || | ||| ||| ||||||||| |||
Sbjct  12   CTCTCTCTCATCTATCATCCTCATCCTCCTTGTTCTATCCTTAACTGATCCCATTCTTTC  71

Query  78   TCTAACCT-TCGAGCCACTAATCTCTTCTCTTGATCTTCATGAAGAAGAAAGCTGCCCTT  136
            |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  72   TCTAACCTATC-AGCCACTAATCTCTTCTCTTGATCTTCATGAAGAAGAAAGCTGCCCTT  130

Query  137  ACACTGTAATTGTTACCACAAGCTGTTTCTCTCCTGATTGGTCTAGAGATCAGGTCACTA  196
            |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct  131  ACACTGTAATTGTTACTACAAGCTGTTTCTCTCCTGATTGGTCTAGAGATCAGATCACTA  190

Query  197  TCGCTTTGGGTGACGCCGACGATAACCAGGTGGTCGCACCGAGACTAGACAAACCGCTAA  256
            | ||||||||||||||| ||| |||| |||| |||||||||||||||||| |||| ||||
Sbjct  191  TTGCTTTGGGTGACGCCAACGGTAACAAGGTAGTCGCACCGAGACTAGACGAACCACTAA  250

Query  257  GTGGAGGAGGTGGTTTTGAGAAATGTTCATCGGACACATTCCAAGTCAAAGGTAAATGTC  316
            |||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct  251  GTGGAGGAGGAGGTTTCGAGAAATGTTCATCGGACACATTCCAAGTCAAAGGTGAATGTC  310

Query  317  TCAACACTATCTGCTCCGTCTACATCTACCGTTCCGGTACCGACGGCTGGATCCCGGAGA  376
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  311  TCAACACTATCTGTTCCGTCTACATCTACCGTTCCGGTACCGACGGCTGGATCCCGGAGA  370

Query  377  CCGTCGAGATATACAAGGAAGGTTCCAAATCCGTGAAATTCGATTTCAACAAGAACGTCC  436
            ||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct  371  CCGTCGAAATCTACAAGGAAGGTTCCAAATCCGTGAAATTTGATTTCAACAAAAACGTCC  430

Query  437  CTGAAAACATTTGGTACGGAAACAACTA-TTGTAACAACACCGATTTGCCACCGCCTTCC  495
            |||| |||||||||||||| |||||| | ||| |||||||||| ||||||||||  ||||
Sbjct  431  CTGAGAACATTTGGTACGGCAACAAC-AGTTGCAACAACACCGGTTTGCCACCGGATTCC  489

Query  496  CCGGATTTCCCTCCGTTTTCTCCATCCATCCCACCGCCTTCACCACCTTATTTTCCTCCT  555
            ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||
Sbjct  490  CCGGATTTCCCTCCGTTTTCTCCATCTGTCCCACCGCCTTCACCGCCTTATTTTCCTCCT  549

Query  556  GAACCACCTTCAATCCCGCCGCCACCACCACCATCACCGCCGTCTGCTGCCTCTGGACGT  615
            ||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||
Sbjct  550  GAACCACCTTCAATCCCACCGCCACCACCA---TCACCGCCGTCTGCTGCCTCTGGACGT  606

Query  616  GGAAGTGGTCAGAgtttggttgttgcgtttgctgc-gt--ttgtgtttgcgtttgcggct  672
            |||||||||||||||||||||||||| |||||||| |   ||||||||| ||||||||||
Sbjct  607  GGAAGTGGTCAGAGTTTGGTTGTTGCATTTGCTGCTGCGGTTGTGTTTGTGTTTGCGGCT  666

Query  673  gtggttgtttga  684
             || ||||||||
Sbjct  667  ATGTTTGTTTGA  678



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32518848201


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5