BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62220.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg950989 jgi|Araly1|950989|scaffold_802876.1 2388 0.0
> Ahg950989 jgi|Araly1|950989|scaffold_802876.1
Length=1583
Score = 2388 bits (1293), Expect = 0.0
Identities = 1472/1557 (95%), Gaps = 18/1557 (1%)
Strand=Plus/Plus
Query 1 ATGCTTCCTGTCTCAAATCCTTCCAGTCCTGAACATCTCCTCAAAAAATCCAGAACCCCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGCTTCCTGTCTCAAATCCTTCCAGTCCTGAACATCTCCTCAAAAAATCCAGAACCCCT 80
Query 61 GACTCCACCACCTCCATTGATCGTAAGAA-CTCATTTAACTCGCTTCACTCGGTCGGAAA 119
||| || ||||| |||||||||| || || ||| || |||||||| |||||| || ||
Sbjct 81 GACACCTCCACCGCCATTGATCGGAA-AAGCTCCTTCAACTCGCTAAACTCGGCCGTTAA 139
Query 120 CCGCTCTTCCTACATCGCCGCTTCTCGTAGCCACTGCACATGGCTGatcctctctcttct 179
|||||| ||||||||| |||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct 140 CCGCTCGTCCTACATCTCCGCCTCTCGAAGCCACTGCACATGGCTGATCCTTTCTCTCCT 199
Query 180 atctctccaactgatcctcttcctcactctccgatccatcccttttcctcACCGTCACAT 239
||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 200 CTCTCTACAACTCATCCTCTTCCTCACTCTCCGATCCATCCCTTTCCCTCACCGTCACAT 259
Query 240 CCCCGAAAACTTCCCTTCTCCCGCCGCCGTCGTCACCACCACCGTCACAACCACCGTCAT 299
||| || |||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct 260 CCCTGACAACTTCCCTTCTCCCGTCGCCGTCG---CCACCACCGT------CACCGTCAT 310
Query 300 TTCTGCCGCCTCTTCCAATCCCCCTCTCTCATCCTCCTCATCTGACGAACGATGCGATTC 359
|| |||||||| |||||| |||| ||||| |||||||| ||||||||||||||||||||
Sbjct 311 CTCCGCCGCCTCCTCCAAT-CCCC-CTCTC-TCCTCCTCCTCTGACGAACGATGCGATTC 367
Query 360 AGGTCGAGTCTTCGTCTACGACATGCCAAAGATCTTCAACGAAGTGATTCTACAACAGTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AGGTCGAGTCTTCGTCTACGACATGCCAAAGATCTTCAACGAAGTGATTCTACAACAGTG 427
Query 420 TGATAATCTCAATCCATGGAGCTCTCGCTGCGACGCACTTTCTAACGACGGGTTTGGTCA 479
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 428 TGATAATCTCAATCCATGGAGCTCTCGCTGCGACGCCCTTTCGAACGACGGATTTGGTCA 487
Query 480 AGAAGCGACGTCGTTAAGCAACGTGATCCCTAAAGATTTGGTTCAATCATGGTTTTGGAC 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AGAAGCGACGTCGTTGAGCAACGTGATCCCTAAAGATTTGGTTCAATCATGGTTTTGGAC 547
Query 540 TGACCAATTCGTAACCGAAATTATTTTCCATAACCGGATTTTAAACCACCGGTGTCGGAC 599
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 548 TGATCAATTCGTAACCGAAATCATTTTCCATAACCGGATTTTAAACCACCGGTGTCGGAC 607
Query 600 TTTGGATCCGGAATCAGCTACGGCGTTTTATATACCGTTCTACGCTGGACTCGCAGTTGG 659
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||
Sbjct 608 TTTGGATCCGGAATCAGCTACGGCTTTTTATATCCCGTTCTACGCTGGGCTCGCGGTTGG 667
Query 660 TCAATATTTATGGTCAAATTACGCAGCGGCTGATCGTGACCGTCATTGTAAGATGATGAC 719
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 668 TCAATATTTATGGTCCAATTACGCAGCGGCTGATCGTGACCGTCATTGTAAAATGATGAC 727
Query 720 ACAGTGGGTCAAAAATCAACCTTATTGGAATAGATCCAACGGTTGGGATCATTTCATTAC 779
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 728 ACAGTGGGTCAAAGATCAACCTTATTGGAATAGATCCAACGGTTGGGATCATTTTATTAC 787
Query 780 TATGGGACGCATCACATGGGATTTTCGCAGGTCTAAAGACGAAGATTGGGGATCTAACTG 839
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 CATGGGACGCATTACATGGGATTTTCGCAGGTCTAAAGACGAAGATTGGGGATCTAACTG 847
Query 840 TATTTATATCCCTGGTATGCGTAACATCACGCGCCTCCTTATTGAGCGTAACTCTTGGGA 899
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TATTTATATCCCCGGTATGCGTAACATCACGCGCCTCCTTATTGAGCGTAACTCTTGGGA 907
Query 900 TCATTTTGACGTCGGTGTACCGTACCCTACCGGATTCCACCCTAGATCGGACTCCGACGT 959
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 908 CCATTTTGACGTCGGTGTACCATACCCTACCGGATTCCACCCTAGAACGGACTCCGACGT 967
Query 960 CGTGAATTGGCAAGATTTTGTTCGGAATCGACGTCGTGAGACGTTGTTCTGTTTCGCTGG 1019
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||
Sbjct 968 CGTGAATTGGCAAGATTTTGTTCGGAATCGCCGTCGTGAAACGTTGTTCTGTTTCGCCGG 1027
Query 1020 AGCTCCACGCGCCGGGATTGTGAATGATTTTAGAGGATTGCTTCTCCGTCACTGTGAGGA 1079
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1028 AGCTCCACGCGCTGGGATTGTGAATGATTTCAGAGGATTGCTTCTCCGTCACTGTGAGGA 1087
Query 1080 ATCGCGTGGGAAGTGTCGGACGGTGGATTGTACCGTCGGGAAATGCTCGAATGGTTCGTC 1139
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GTCACGTGGGAAGTGTCGGACGGTGGATTGTACCGTCGGGAAATGCTCGAATGGTTCGTC 1147
Query 1140 GGCGATTTTGGAGACGTTTCTCGGGTCTGATTTTTGTCTCCAGCCACGAGGAGATAGCTT 1199
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1148 GGCGATTTTGGAGACGTTTCTCGGGTCTGATTTTTGTCTCCAGCCTCGAGGAGATAGCTT 1207
Query 1200 CACACGCCGGTCGATATTTGATTGTATGTTGGCCGGTTCGATTCCGGTTTTCTTTTGGAG 1259
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1208 CACTCGCCGGTCGATTTTTGATTGTATGTTGGCCGGTTCGATTCCGGTTTTCTTTTGGAG 1267
Query 1260 ACGAAGCGCTTACATGCAGTATCAGTGGTTTTTACCGGATAAACCGGATAGTTATTCGGT 1319
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1268 ACGAAGCGCTTACATGCAGTATCAGTGGTTTTTACCGGATAAACCAGATAGTTACTCGGT 1327
Query 1320 TTTTATAGACCGGAACGAGG-T-AACAAACGGCACGACGTCTATAAAGGAAGTGTTGGAA 1377
||||||||||||||| | || | || |||||||||||||||||||||||||||||||| |
Sbjct 1328 TTTTATAGACCGGAATG-GGATTAA-AAACGGCACGACGTCTATAAAGGAAGTGTTGGGA 1385
Query 1378 CGGTATAGCAAAGAAGATGTGAGGAAGATGAGAGAAAGAGTGATTGATTTGATACCGAAT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 CGGTATAGCAAAGAAGATGTGAGGAAGATGAGAGAAAGAGTGATTGATTTGATACCGAAT 1445
Query 1438 TTGGTTTACGCTAAGTCTCCGAATGGGTTAGAGACTTTCAAAGACGCTTTTGATGTGGCG 1497
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1446 TTGGTTTACGCAAAGTCTCCGAATGGGTTAGAGACTTTCAAAGACGCCTTCGATGTGGCG 1505
Query 1498 ATAGATGGAGTTTTTAGGAGATTCAAGGAGCAAGAGAAATGGTACAAATGGAGATGA 1554
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1506 ATAGATGGAGTTTTTAGGAGATTCAAGGAGCAAGAGAATTGGTACAAATGGAGATGA 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5