BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62230.1
Length=3310
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496399 jgi|Araly1|496399|fgenesh2_kg.8__2215__AT5G62230.1 4966 0.0
Ahg940170 jgi|Araly1|940170|scaffold_600714.1 2634 0.0
> Ahg496399 jgi|Araly1|496399|fgenesh2_kg.8__2215__AT5G62230.1
Length=3268
Score = 4966 bits (2689), Expect = 0.0
Identities = 3067/3249 (94%), Gaps = 27/3249 (1%)
Strand=Plus/Plus
Query 64 TGCAACAATGGCAGAACAAGCCTGAAGTTTCGTTCTTTTGTGTTTTGGTTTCCTCTGCTT 123
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 45 TGCTACAATGGCAGAACAAGCCTGAACTTTCGTTCTTTTGTGTTTTGGTTTCCTCTGCTT 104
Query 124 TGTTGTTATTGAATCAAAACTTCAACGAGCTTCTTGGCTTATTACCCCAAAAGGAAAGAA 183
||||||| ||||||| |||||||||||||||| ||||||||||||| ||||||| | ||
Sbjct 105 TGTTGTTTTTGAATC-AAACTTCAACGAGCTTATTGGCTTATTACCTCAAAAGG--A-AA 160
Query 184 GAATAAGAAGaaaaaaaTGAAGGAGAAGATGCAGCGAATGGTTTTATCTTTAGCAATGGT 243
| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 161 G--T-AGAAGAAAAAAATGAAGGAGAAGATGCAGCGAATGGTTTTATGTTTAGCAATGGT 217
Query 244 GGGTTTTATGGTTTTTGGTGTTGCTTCGGCTATGAACAACGAAGGGAAAGCTCTGATGGC 303
|| |||| || || ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 218 GGTTTTTCTGCTTCTTGGTGTTGCTTCTTCTATGAACAACGAAGGGAAAGCTTTGATGGC 277
Query 304 GATAAAAGGCTCTTTCAGCAACTTAGTGAATATGCTTTTGGATTGGGACGATGTTCACAA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 GATAAAAGGCTCTTTCAGCAACTTAGTGAATATGCTTTTGGATTGGGACGATGTTCACAA 337
Query 364 CAGTGACTTGTGTTCTTGGCGAGGTGTTTTCTGCGACAACGTTAGCTACTCCGTTGTCTC 423
||||||||| ||||||||| ||||||| | |||||||||||||| || ||||||||||||
Sbjct 338 CAGTGACTTCTGTTCTTGGAGAGGTGTCTACTGCGACAACGTTACCTTCTCCGTTGTCTC 397
Query 424 TCTGAATTTGTCCAGTCTGAATCTTGGAGGGGAGATATCTCCAGCTATTGGAGACCTACG 483
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 398 GCTGAATCTGTCAAGTCTGAATCTTGGAGGGGAGATATCTCCAGCTATTGGAGATCTATG 457
Query 484 GAATTTGCAATCAATAGACTTGCAAGGTAATAAACTAGCAGGTCAAATTCCAGATGAGAT 543
||||||| ||||||||||||||||||| |||||| | || |||||||| || ||||||||
Sbjct 458 GAATTTGGAATCAATAGACTTGCAAGGAAATAAATTGGCTGGTCAAATCCCTGATGAGAT 517
Query 544 TGGAAACTGTGCTTCTCTTGTTTATCTGGATTTGTCCGAGAATCTGTTATATGGAGACAT 603
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 518 TGGAAACTGTGCTTCTCTTGTTTATCTGGATTTGTCTGATAATCTGTTATATGGTGACAT 577
Query 604 ACCTTTCTCAATCTCTAAACTCAAGCAGCTTGAAACTCTGAATCTGAAGAACAATCAGCT 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 ACCTTTCTCAATCTCTAAACTCAAGCAGCTTGAAACTCTGAATCTGAAGAACAATCAGCT 637
Query 664 CACAGGTCCTGTACCAGCAACCTTAACCCAGATTCCAAACCTTAAGAGACTTGATCTTGC 723
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 638 CACAGGCCCAGTACCAGCGACCTTAACCCAGATTCCAAACCTTAAGAGACTTGATCTTGC 697
Query 724 TGGCAATCATCTAACGGGTGAGATATCGAGATTGCTTTACTGGAATGAAGTTTTGCAGTA 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 TGGCAATCATCTAACGGGTGAGATATCGAGATTGCTTTACTGGAATGAAGTTTTGCAGTA 757
Query 784 TCTTGGATTACGAGGGAATATGTTGACTGGAACGTTATCTTCTGATATGTGTCAGCTAAC 843
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TCTCGGTTTACGTGGGAATATGTTGACTGGAACGTTATCTTCTGATATGTGTCAGCTAAC 817
Query 844 CGGTTTGTGGTACTTTGATGTGAGAGGAAATAATCTAACTGGAACCATCCCGGAGAGCAT 903
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 818 CGGTTTATGGTACTTTGATGTGAGAGGAAATAATCTAACTGGAACAATCCCTGAGAGCAT 877
Query 904 CGGAAATTGCACAAGCTTTCAAATCCTGGACATATCTTATAATCAGATAACAGGAGAGAT 963
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 878 TGGAAATTGCACAAGCTTTCAAATCCTGGACATATCTTATAATCAGATAACTGGAGAGAT 937
Query 964 TCCTTACAATATCGGCTTCCTCCAAGTTGCTACTCTGTCACTTCAAGGAAACAGATTGAC 1023
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TCCTTACAACATCGGCTTTCTCCAAGTTGCTACTCTGTCACTTCAAGGAAACAGATTGAC 997
Query 1024 GGGTAGAATTCCAGAAGTTATTGGTCTAATGCAGGCTCTTGCTGTTTTGGATTTGAGTGA 1083
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 998 TGGTAGAATTCCAGAAGTTATAGGTCTAATGCAGGCTCTTGCTGTTTTGGATTTGAGTGA 1057
Query 1084 CAATGAGCTTGTTGGTCCTATCCCACCGATACTTGGCAATCTCTCATTTACCGGAAAGTT 1143
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1058 TAATGAGCTTGTTGGTCCTATACCACCGATACTTGGCAATCTCTCGTTTACCGGAAAGTT 1117
Query 1144 GTATCTCCATGGCAATATGCTCACTGGTCCAATCCCCTCTGAGCTTGGGAATATGTCACG 1203
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1118 GTATCTCCATGGCAATAAGCTCACTGGTCCAATCCCATCTGAGCTTGGGAATATGTCACG 1177
Query 1204 TCTCAGCTATTTGCAGCTAAACGACAATAAACTAGTGGGAACTATTCCACCTGAGCTTGG 1263
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1178 TCTCAGCTATTTGCAGCTAAATGACAATAAACTAGTCGGAACTATTCCACCTGAGCTTGG 1237
Query 1264 AAAGCTGGAGCAATTGTTTGAACTGAATCTTGCCAACAACCGTTTAGTAGGGCCCATACC 1323
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1238 TAAGCTGGAGCAATTGTTTGAATTGAATCTTGCCAACAACCGTTTGGTAGGGCCCATACC 1297
Query 1324 ATCCAACATTAGTTCATGTGCAGCCTTGAATCAATTCAATGTTCATGGGAACCTCTTGAG 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1298 ATCCAACATTAGTTCATGTGCAGCCTTGAATCAATTCAATGTTCATGGGAACCTCTTAAG 1357
Query 1384 TGGATCTATTCCACTGGCGTTTCGCAATCTCGGGAGCTTGACTTATCTGAATCTTTCGTC 1443
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1358 TGGATCTATACCACTGGCGTTTCGCAATCTCGGGAGTTTGACTTATCTAAATCTTTCGTC 1417
Query 1444 GAACAATTTCAAGGGAAAAATACCAGTTGAGCTTGGACATATAATCAATCTTGACAAACT 1503
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 GAACAATTTCAAGGGGAAAATACCAGTTGAGCTTGGACATATAATCAATCTTGACAAACT 1477
Query 1504 AGATCTGTCTGGCAATAACTTCTCAGGGTCTATACCATTAACGCTTGGCGATCTTGAACA 1563
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1478 AGATCTGTCTGGCAATAACTTCTCAGGGTCTATACCATTAACGCTTGGTGATCTTGAACA 1537
Query 1564 CCTTCTCATATTAAATCTTAGCAGAAACCATCTTAGTGGACAATTACCTGCAGAGTTTGG 1623
|||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1538 CCTTCTCATATTAAATCTAAGCAGAAACTATCTTAGTGGACAATTGCCTGCAGAGTTTGG 1597
Query 1624 GAACCTTCGAAGCATTCAGATGATTGATGTATCATTCAATCTGCTCTCCGGAGTTATTCC 1683
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1598 AAACCTTCGAAGCATTCAGATGATTGATGTATCATTCAATCTTATCTCCGGAGTTATTCC 1657
Query 1684 AACTGAACTTGGCCAATTGCAGAATTTAAACTCTTTAATATTGAACAACAACAAGCTTCA 1743
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1658 AACTGAACTTGGCCAATTGCAGAATTTAAACTCTTTAATATTGAACTACAACAAGCTTCA 1717
Query 1744 TGGGAAAATTCCAGATCAGCTTACGAACTGCTTCACTCTTGTCAATCTGAATGTCTCCTT 1803
||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 1718 TGGGAAAATTCCAGATCAGCTTACGAATTGTTTCGCTCTTGTCAATCTGAATGTCTCCTT 1777
Query 1804 CAACAATCTCTCCGGGATAGTCCCACCAATGAAAAACTTCTCACGTTTTGCTCCAGCCAG 1863
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 CAACAATCTCTCAGGGATAATCCCACCAATGAAAAACTTCTCACGTTTTGCTCCAGCCAG 1837
Query 1864 CTTTGTTGGAAATCCATATCTTTGTGGAAACTGGGTTGGATCTATTTGTGGTCCTTTACC 1923
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct 1838 CTTTGTTGGAAATCCATACCTTTGTGGAAACTGGGTTGGATCTATATGCGGTCCTTTGCC 1897
Query 1924 GAAATCTCGAGTATTCTCCAGAGGTGCTTTGATCTGCATTGTTCTTGGCGTCATCACTCT 1983
|||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1898 GAAATCCCGAGTATTCTCCAGAGGTGCTGTGATCTGCATTGTTCTTGGTGTCATCACTCT 1957
Query 1984 CCTATGTATGATTTTCCTTGCAGTTTACAAATC-AATGCAGCAGAAGAAGATTCTACAAG 2042
|||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||
Sbjct 1958 CCTATGTATGATTTTCCTCGCAGTTTACAAATCGAA-GCAGCAGAAGAAGATTCTAGAAG 2016
Query 2043 GCTCCTCAAAACAAGCTGAAGGGTTAACCAAGCTAGTGATTCTCCACATGGACATGGCAA 2102
|| ||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 2017 GCCCCTCAAAACAAGCCGAAGGCTCAACCAAGCTAGTGATTCTCCACATGGACATGGCAA 2076
Query 2103 TTCATACATTTGATGATATCATGAGAGTGACTGAGAATCTTAACGAAAAGTTTATAATTG 2162
||||||||||||||||||| |||||||| || |||||||||| ||||||||||||||||
Sbjct 2077 TTCATACATTTGATGATATAATGAGAGTAACCGAGAATCTTAGTGAAAAGTTTATAATTG 2136
Query 2163 GATATGGTGCTTCTAGCACGGTATACAAATGTGCATTAAAAAGTTCCCGACCTATTGCCA 2222
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2137 GATACGGTGCTTCTAGTACGGTATACAAATGTGCATTGAAAAGTTCCCGACCTATTGCCA 2196
Query 2223 TTAAGCGACTCTACAATCAGTATCCGCATAACTTGCGGGAATTTGAGACAGAACTTGAGA 2282
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2197 TTAAGCGACTCTACAATCAGTATCCGCATAACTTGCGGGAATTTGAGACAGAACTCGAGA 2256
Query 2283 CCATTGGGAGCATTAGGCACAGAAACATAGTCAGCTTGCATGGATATGCCTTGTCTCCTA 2342
|||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2257 CCATAGGGAGCATCAGGCACAGGAACATAGTCAGCTTGCATGGATATGCCTTGTCTCCTA 2316
Query 2343 CTGGCAACCTTCTTTTCTATGACTACATGGAAAATGGATCACTTTGGGACCTTCTTCATG 2402
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2317 TTGGCAACCTTCTTTTCTATGACTACATGGAAAATGGATCACTTTGGGACCTTCTTCATG 2376
Query 2403 GGTCATTGAAGAAAGTGAAGCTTGATTGGGAGACAAGGTTGAAGATAGCGGTTGGAGCTG 2462
| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2377 GTTCACTGAAGAAAGTGAAGCTTGATTGGGAGACGAGGTTGAAGATAGCGGTTGGAGCTG 2436
Query 2463 CACAAGGACTAGCCTATCTTCACCACGATTGTACTCCTCGAATCATTCACCGTGACATCA 2522
| |||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||
Sbjct 2437 CGCAAGGACTCGCCTATCTTCACCATGATTGTACTCCTCGGATTATTCACCGAGACATCA 2496
Query 2523 AGTCATCGAACATACTTCTTGATGAGAATTTCGAAGCACATTTATCTGATTTCGGGATTG 2582
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2497 AGTCATCGAACATACTTCTTGATGAGAATTTCGAAGCACATTTATCGGATTTTGGGATTG 2556
Query 2583 CTAAGAGCATACCAGCTAGCAAAACCCATGCCTCGACTTATGTTTTGGGAACAATTGGTT 2642
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2557 CTAAGAGCATACCAGCGAGCAAAACTCATGCTTCGACTTATGTTTTGGGAACAATTGGTT 2616
Query 2643 ATATAGACCCAGAGTATGCTCGTACTTCACGAATCAATGAGAAATCCGATATATACAGCT 2702
|||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||
Sbjct 2617 ATATAGACCCAGAGTATGCTCGTACTTCGCGTCTCAATGAGAAATCTGATATCTACAGCT 2676
Query 2703 TCGGTATTGTTCTTCTTGAGCTTCTCACTGGGAAGAAAGCAGTGGATAACGAAGCTAACT 2762
|||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 2677 TCGGGATTGTTCTTCTTGAGCTTCTTACTGGAAAGAAAGCAGTAGATAACGAAGCTAACT 2736
Query 2763 TGCATCAACTGATATTGTCAAAGGCTGATGATAATACTGTGATGGAAGCAGTTGATCCAG 2822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2737 TGCATCAACTGATATTGTCAAAGGCTGATGATAATACTGTGATGGAAGCAGTTGATCCAG 2796
Query 2823 AGGTTACTGTGACTTGTATGGACTTGGGACATATCAGGAAGACATTTCAGCTGGCTCTCT 2882
||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 2797 AGGTTACGGTGACATGTATGGATTTGGGACATATCAGAAAGACATTTCAGCTGGCTCTCT 2856
Query 2883 TATGCACAAAGCGAAACCCTTTAGAGAGACCCACAATGCTTGAAGTCTCTAGGGTTCTGC 2942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2857 TATGCACAAAGCGAAACCCTTTAGAGAGACCCACAATGCTTGAAGTCTCTAGGGTTCTGC 2916
Query 2943 TCTCTCTTGTCCCATCTCTGCAAGTAGCAAAGAAGCTACCTTCTCTTGATCACTCAACCA 3002
|||| ||| | |||||||||||||||||||||||||| ||||||| |||||| || ||||
Sbjct 2917 TCTCCCTTCTTCCATCTCTGCAAGTAGCAAAGAAGCTGCCTTCTCATGATCAATCGACCA 2976
Query 3003 AAAAGCTGCAGCAAGAGAATGAAGTTAGGAATCCTGATGCAGAAGCATCTCAATGGTTTG 3062
|||||| |||||||||||||| ||| |||| |||||| ||||||||||| ||||||||||
Sbjct 2977 AAAAGCCGCAGCAAGAGAATGTAGTAAGGAGTCCTGAGGCAGAAGCATCGCAATGGTTTG 3036
Query 3063 TTCAGTTCCGTGAAGTCATCTCCAAAAGTAGCATATAAGAGAAAGATTCCAGGGCTTTT- 3121
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 3037 TTCAGTTCCGTGAAGTCATCTCCAAAAGTAGCATATAAGAGAA-GATTCCCGGGCTTTTT 3095
Query 3122 GTTTAGTTTCTTGTGTCCTAAGGAAGATAGTAATGCTGATTGGAAGGAAAGGATGGTTTT 3181
|||||||||||||| ||| |||||| ||||| |||||||||||||| ||||||| ||||
Sbjct 3096 GTTTAGTTTCTTGTTTCCCAAGGAAAATAGTGTTGCTGATTGGAAGGGAAGGATG-TTTT 3154
Query 3182 TCTATAGTGAATTTAGGTAGTACAAGGGGTATTTTGGGTAAGGAAAAATAATTTATGGTA 3241
| | |||| | | | | ||||||||||||||||||||||| || ||||| |
Sbjct 3155 T-T-TAGT-A-----G--A--A---GGGGTATTTTGGGTAAGGAAAAAGAAGGTATGGGA 3199
Query 3242 AGCATTTAAGACAAGAACAAAGGTTATATGAAAGAAACGGATATGTGAAGTTAATGTTTG 3301
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3200 AGCATTTAAGACAAGAACAAAGGTTATATGAAAGAAAAGGATATGTGAAGTTAATGTTTG 3259
Query 3302 TTTTCTCCC 3310
|||||||||
Sbjct 3260 TTTTCTCCC 3268
Score = 84.2 bits (45), Expect = 6e-15
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 1 CATCTCTGGCTCTGCATTTCTTGCAGTTCACGCTAATCACCTGTT 45
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CATCTCTGGCTCTGCATTTCTTGCAGTTCACGCTAATCACCTGTT 45
> Ahg940170 jgi|Araly1|940170|scaffold_600714.1
Length=2942
Score = 2634 bits (1426), Expect = 0.0
Identities = 2315/2743 (84%), Gaps = 66/2743 (2%)
Strand=Plus/Plus
Query 278 AACAACGAAGGGAAAGC-TCTGATGGCGATAAAAGGCTCTTTCAGCAACTTAGTGAATAT 336
||||||||||| ||||| | ||||||||||||||| ||| ||||||||| | | ||||||
Sbjct 102 AACAACGAAGGAAAAGCGT-TGATGGCGATAAAAGCCTCATTCAGCAACGTGGCGAATAT 160
Query 337 GCTT-TTGGATTGGGACGATGTTCACAACAGTGACTTGTGTTCTTGGCGAGGTGTTTTCT 395
|||| || |||||||||||||||||||||| ||||| ||||||||| ||||||| ||||
Sbjct 161 GCTTCTT-GATTGGGACGATGTTCACAACAACGACTTTTGTTCTTGGAGAGGTGTCTTCT 219
Query 396 GCGACAACGTTAG-CTACTCCGTTGTCTCTCTGAATTTGTCCAGTCTGAATCTTGGAGGG 454
| || |||||||| || ||||||||||||||| ||| |||| | |||||||||||| |||
Sbjct 220 GTGATAACGTTAGCCT-CTCCGTTGTCTCTCTTAATCTGTCAAATCTGAATCTTGGTGGG 278
Query 455 GAGATATC-TCCAGCTATTGGAGACCT-ACGGAATTTGCAATCAATAGACTTGCAAGGTA 512
|||||||| | |||| ||||||| | | ||||| |||| ||||||||||||||||| |
Sbjct 279 GAGATATCAT-CAGCCCTTGGAGATTTGA-GGAATCTGCAGTCAATAGACTTGCAAGGAA 336
Query 513 ATAAACTAGCAGGTCAAATTCCAGATGAGATTGGAAACTGTGCTTCTCTTGTTTATCTGG 572
||||| | | |||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 337 ATAAATTGGGTGGTCAAATTCCAGATGAGATTGGAAACTGTGCTTCTCTTGCTTATGTGG 396
Query 573 ATTTGTCCGAG-AAT-CTGTTATATGGAGACATACC-TTTCTCAATCTCTAAACTCAAGC 629
|||| ||| | ||| | || | |||||||||||| ||| ||||||||||||||||| |
Sbjct 397 ATTTCTCC-ACTAATTCA-TTGTTTGGAGACATACCGTTT-TCAATCTCTAAACTCAAAC 453
Query 630 AGCTTGAAACTCTGAATCTGAAGAACAATCAGCTCACAGGTCCTGTACCAGCAACCTTAA 689
|||| || |||||| |||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 454 AGCTGGAGTTTCTGAACCTGAAGAATAATCAGCTCACTGGTCCAATACCAGCAACCTTAA 513
Query 690 CCCAGATTCCAAACCTTAAGAGACTTGATCTTGCTGGCAATCATCTAACGGGTGAGATAT 749
| ||||||||||||||||||| ||||| ||||| | || || ||||| |||||||| |
Sbjct 514 CTCAGATTCCAAACCTTAAGACCCTTGACCTTGCAAGAAACCAGCTAACTGGTGAGAT-T 572
Query 750 CGA-GATTGCTTTACTGGAATGAAGTTTTGCAGTATCTTGGATTACGAGGGAATATGTTG 808
| | | || || ||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 573 CCAAGGTTACTCTACTGGAATGAAGTTTTACAGTATCTTGGTTTACGTGGGAATATGTTA 632
Query 809 ACTGGAACGTTATCTTCTGATATGTGTCAGCTAACCGGTTTGTGGTACTTTGATGTGAGA 868
||||| || || ||| |||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 633 ACTGGGACATTGTCTCCTGATATGTGTCAGCTTACGGGTCTGTGGTACTTTGATGTGAGA 692
Query 869 GGAAATAATCTAACTGGAACCATCCCGGAGAGCATCGGAAATTGCACAAGCTTTCAAATC 928
|| || || |||||||||| ||||| || | ||| || || || ||||||||| |||||
Sbjct 693 GGCAACAACCTAACTGGAAGTATCCCTGATAACATTGGCAACTGTACAAGCTTTGAAATC 752
Query 929 CTGGACATATCTTATAATCAGATAACAGGAG-AGATTCCTTACAATATCGGCTTCCTCCA 987
||||| |||||||||||||||| || |||| | || || ||||||||||| ||||||||
Sbjct 753 CTGGATGTATCTTATAATCAGATTACTGGAGTA-ATACCCTACAATATCGGTTTCCTCCA 811
Query 988 AGTTGCTACTCTGTCACTTCAAGGAAACAGATTGACGGGTAGAATTCCAGAAGTTATTGG 1047
|||||||||||| ||||||||||||||||| || || ||||||||||||||||| |||||
Sbjct 812 AGTTGCTACTCTATCACTTCAAGGAAACAGGTTAACTGGTAGAATTCCAGAAGTGATTGG 871
Query 1048 TCTAATGCAGGCTCTTGCTGTTTTGGATTTGAGTGACAATGAGCTTGT-TGGTCCTATCC 1106
||| |||||||||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 872 TCTGATGCAGGCTCTTGCTGTTTTGGATTTGAGTGACAATGAA-TTAACTGGGCCTATCC 930
Query 1107 CACCGATACTTGGCAATCTCTCATTTACCGGAAAGTTGTATCTCCATGGCAATATGCTCA 1166
||| |||||||| ||||||||||| || ||||| ||||||||||||| || | | |||
Sbjct 931 TACCAATACTTGGGAATCTCTCATTCACTGGAAAACTGTATCTCCATGGTAACAAGTTCA 990
Query 1167 CTGGTCCAATCCC-CTCTGAGCTTGGGAATATGTCACGTCTCAGCTATTTGCAGCTAAAC 1225
| || | ||| || | |||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 991 CCGGACAAATTCCAC-CTGAGCTTGGCAATATGTCACGACTCAGCTATTTGCAACTAAAT 1049
Query 1226 GACAATAAACTAGTGGGAA-CTATTCCACCTGAGCTTGGAAAGCTGGAGCAATTGTTTGA 1284
|| ||| |||||||||||| | || |||||||||||||| |||||||| |||||||| ||
Sbjct 1050 GATAATGAACTAGTGGGAAAC-ATCCCACCTGAGCTTGGGAAGCTGGAACAATTGTTCGA 1108
Query 1285 ACTGAATCTTGCCAACAACCGT-TTAGTAGGGCCCATACCATCCAACATTAGTTCATGTG 1343
||||||||| || |||||| | || |||||||| || ||||| ||||||||||| ||||
Sbjct 1109 ACTGAATCTCGCAAACAACTATCTT-GTAGGGCCAATTCCATCTAACATTAGTTCCTGTG 1167
Query 1344 CAGCCTTGAATCAATTCAATGTTCATGGGAACCTCTTGAGTGGATCTATTCCACTGGCGT 1403
| |||||||||||||||||||| ||||||||| || ||||||||||||| ||||| | |
Sbjct 1168 CCGCCTTGAATCAATTCAATGTGCATGGGAACTTCCTGAGTGGATCTATACCACTTGAAT 1227
Query 1404 TTCGCAATCTCGGGAGCTTGACTTATCTGAATCTTTCGTCGAACAATTTCAAGGGAAAAA 1463
| || ||||| || ||||||||||||||||||||||| || |||| ||||||||| ||||
Sbjct 1228 TCCGGAATCTTGGAAGCTTGACTTATCTGAATCTTTCTTCAAACAGTTTCAAGGGCAAAA 1287
Query 1464 TACCAGTTGAGCTTGGACATATAATCAATCTTGACAAACTAGATCTGTCTGGCAATAACT 1523
|||| | ||||||||| ||||| ||||||||||||| | | |||||||||||||| || |
Sbjct 1288 TACCTGCTGAGCTTGGCCATATTATCAATCTTGACACATTGGATCTGTCTGGCAACAATT 1347
Query 1524 TCTCAGGGTCTATACCATTAACGCTTGGCGATCTTGAACACCTTCTCATATTAAATCTT- 1582
|||||||||| ||||||||||| ||||| |||||||| || |||||||| ||||| |||
Sbjct 1348 TCTCAGGGTCAATACCATTAACACTTGGTGATCTTGAGCATCTTCTCATCTTAAA-CTTG 1406
Query 1583 AGCAGAAACCATCTTAGTGG-ACAATTACCTGCAGAGTTTGGGAACCTTCGAAGCATTCA 1641
|||||||| ||||| | ||| ||| || |||||||||||||||||||| |||||||||||
Sbjct 1407 AGCAGAAATCATCTCAATGGGACA-TTGCCTGCAGAGTTTGGGAACCTCCGAAGCATTCA 1465
Query 1642 GATGATTGATGTATCATTCAATCTGCTCT-CCGGAGTTATTCCAACTGAACTTGGCCAAT 1700
||| || ||||||||||||||| | || | |||| ||||||||||| ||||||||||| |
Sbjct 1466 GATCATCGATGTATCATTCAATTTTCT-TGCCGGTGTTATTCCAACAGAACTTGGCCAGT 1524
Query 1701 TGCAGAATTTAAACTCTTTAATATTGAACAACAACAAGCTTCATGGGAAAATTCCAGATC 1760
||||||| |||||||| | ||| |||||||||||||| ||||||||||||| || ||||
Sbjct 1525 TGCAGAACATAAACTCTATGATACTGAACAACAACAAGATTCATGGGAAAATCCCTGATC 1584
Query 1761 AGCTTACGAACTGCTTCACTCTTGTCAATCTGAATGTCTCCTTCAACAATCTCTCCGGGA 1820
|||| || || ||||||| ||||| ||||||||| |||||||||| ||||| || || |
Sbjct 1585 AGCTAACTAATTGCTTCAGTCTTGCCAATCTGAACATCTCCTTCAATAATCTATCTGGAA 1644
Query 1821 TAGTCCCACCAATGAAAAACTTCTCACGTTTTGCTCCAGCCAGCTT-TGTTGGAAATCCA 1879
|| ||||||| ||||| ||||| ||||||||||| || |||||||| | |||||||||||
Sbjct 1645 TAATCCCACCTATGAAGAACTTTTCACGTTTTGCCCCGGCCAGCTTCT-TTGGAAATCCA 1703
Query 1880 TATCTTTGTGGAAACTGGGTTGGATCTATTTGTGGTCC-T-TTA-CCGAAATCTCGAGTA 1936
| ||| || || |||||| ||||||| || ||||| || | || || || |||||||||
Sbjct 1704 TTTCTCTGCGGGAACTGGATTGGATCAATCTGTGGCCCATCTTTGCCCAAGTCTCGAGTA 1763
Query 1937 TTCTCCAGAGGTGCTTTGATCTGCATTGTTCTTGGCGTCATCACTCTCCTATGTATGATT 1996
||| |||||| ||| |||| || || ||||| || ||||||||||| |||| |||||
Sbjct 1764 TTCACCAGAGTTGCCGTGATTTGTATGGTTCTCGGTTTCATCACTCTCATATGCATGATA 1823
Query 1997 TTCCTTGCAGTTTACAAATCAATGCAGCAGAAGAAGATTCTAC-AA-GGCTCCTCAAAAC 2054
||| ||| |||||||| |||| ||||||||| | | || | || ||||| |||||||
Sbjct 1824 TTCATTGTGGTTTACAAGTCAAAGCAGCAGAA-ACCAGTCG-CGAAAGGCTCTTCAAAAC 1881
Query 2055 AAGCTGAAGGGTTAACCAAGCTAGTGATTCTCCACATGGACATGGCAATTCATACATTTG 2114
|| ||||||||| ||| ||||| |||||||| |||||||||||||| ||||| || ||||
Sbjct 1882 AACCTGAAGGGTCAACAAAGCTGGTGATTCTTCACATGGACATGGCTATTCACACGTTTG 1941
Query 2115 ATGATATCATGAGAGTGACTGAGAATCTTAACGA-AAAGTTTATAATTGGATATGGTGCT 2173
|||||||||||||||| || || || || | || ||| | || |||||||| || |||
Sbjct 1942 ATGATATCATGAGAGTTACAGAAAACCTCAGTGAGAAA-TACATCATTGGATACGGCGCT 2000
Query 2174 TCTAGCACGGTATACAAATGTGCAT-TA-AAAAGTTCCCGACCTATTGCCATTAAGCGAC 2231
||||||||||| ||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 2001 TCTAGCACGGTTTACAA--GTGCACCTCCAAAAGTTCCCGACCTATTGCCATTAAGCGAA 2058
Query 2232 TCTACAATCAGTATCCGCAT-AACTTGCGGGAATTTGAGACAGAACTTGAGACCATTGGG 2290
|||||||||||||||| || ||||| || || ||||||||||| || |||||||||||
Sbjct 2059 TCTACAATCAGTATCC-CAACAACTTCCGTGAGTTTGAGACAGAGCTCGAGACCATTGGC 2117
Query 2291 AGCATTAGGCACAGAAACATAGTCAGCTTGCATGGATATGCCTTGTCTCC-TACTGGCAA 2349
||||| || |||||||||||||| |||||||| ||||| ||||||||||| | ||||||
Sbjct 2118 AGCATCAGACACAGAAACATAGTAAGCTTGCACGGATACGCCTTGTCTCCCTT-TGGCAA 2176
Query 2350 CCTTCTTTTCTATGACTACATGGAAAATGGATCACTTTGGGACCTTCTTCATGGGTCATT 2409
||| || ||||| ||||||||||||||||| || |||||||| ||||| |||||| | |
Sbjct 2177 CCTCCTCTTCTACGACTACATGGAAAATGGCTCTCTTTGGGATCTTCTCCATGGGCC-TG 2235
Query 2410 G-AAGAAAGTGAAGCTTGATTGGGAGACAAGGTTGAAGATAGCGGTTGGAGCTGCACAAG 2468
| |||||||||| |||||| ||||| |||||| ||||||| || ||||||||||||||||
Sbjct 2236 GGAAGAAAGTGATGCTTGACTGGGAAACAAGGCTGAAGATTGCAGTTGGAGCTGCACAAG 2295
Query 2469 GACTAGCCTATCTTCACCACGATTGTACTCCTCGAATCATTCACCGTGACATCAAGTCAT 2528
|||| || ||||||||||| || || |||||| | || || || || |||||||||||||
Sbjct 2296 GACTTGCATATCTTCACCATGACTGCACTCCTAGGATAATCCATCGGGACATCAAGTCAT 2355
Query 2529 CGAACATACTTCTTGATGAGAATTTCGAAGCACATTTATCTGATTTCGGGATTGCTAAGA 2588
| |||||||| ||||||| |||||| ||||| | ||| || ||||| |||||||| ||||
Sbjct 2356 CAAACATACTCCTTGATGGGAATTTTGAAGCGCGTTTGTCAGATTTTGGGATTGCCAAGA 2415
Query 2589 GCATACCAGCTAGCAAAACCCATGCCTCGACTTATGTT-TTGGGAACAATTGGTTATATA 2647
|||||||||||| |||||| |||| || || |||||| |||| ||| ||||| |||||
Sbjct 2416 GCATACCAGCTACCAAAACTTATGCGTCAACCTATGTTCTTGG-AACCATTGGCTATATT 2474
Query 2648 GACCCAGAGTATGCTCGTACTTCACGAATCAATGAGAAATCCGATATATACAGCTTCGGT 2707
||||||||||||||| | ||||| || | || ||||| || ||||| ||||||||||||
Sbjct 2475 GACCCAGAGTATGCTAGAACTTCGCGTCTGAACGAGAAGTCTGATATCTACAGCTTCGGT 2534
Query 2708 ATTGTTCTTCTTGAGCTTCTCACTGGGAAGAAAGCAGTGGATAACGAAGCTAACTTGCAT 2767
||||| |||||||||||||| ||||||||||| || || |||||||| || |||||||||
Sbjct 2535 ATTGTCCTTCTTGAGCTTCTGACTGGGAAGAAGGCTGTAGATAACGAGGCCAACTTGCAT 2594
Query 2768 CAACTGATATTGTC-AAAGGCTGATGATAATACTGTGATGGAAGCAGTTGATCCAGAGGT 2826
||| ||||| |||| |||| | ||||||||||| ||||||||||| |||||| |||||||
Sbjct 2595 CAAATGATACTGTCGAAAG-CAGATGATAATACAGTGATGGAAGCTGTTGATGCAGAGGT 2653
Query 2827 TACTGTGACTTGTATGGACTT--GGGACATATCAGGAAGACATTTCAGCTGGCTCTCTTA 2884
| | ||||| || ||||| || ||| || |||| ||||||||||||||| || |||||
Sbjct 2654 TTCAGTGACGTGCATGGA-TTCAGGG-CACATCAAGAAGACATTTCAGCTAGCCCTCTTG 2711
Query 2885 TGCACAAAGCGAAACCCTTTAGAGAGACCCACAATGCTTGAAGTCTCTAGGGTTCTGCTC 2944
||||| |||||||||||||| ||||| |||||||||| || ||||||||||||||||||
Sbjct 2712 TGCACCAAGCGAAACCCTTTGGAGAGGCCCACAATGCAGGAGGTCTCTAGGGTTCTGCTC 2771
Query 2945 TCTCTTGTCCCATCTCTGCAAGTAGCAAAGAAGCTACCTTCTC 2987
|||||| ||||||||| || | |||| ||| |||||||||
Sbjct 2772 TCTCTTCTCCCATCTC--CACCTC-CAAAAAAGTTACCTTCTC 2811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124943012159
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5