BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62250.1
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496401 jgi|Araly1|496401|fgenesh2_kg.8__2217__AT5G62250.1 2538 0.0
> Ahg496401 jgi|Araly1|496401|fgenesh2_kg.8__2217__AT5G62250.1
Length=1644
Score = 2538 bits (1374), Expect = 0.0
Identities = 1567/1658 (95%), Gaps = 22/1658 (1%)
Strand=Plus/Plus
Query 1 ATGTCCAAATCTCAAATCGAATCAACTTGGT-CATCTCTTCTACAAGAACTTGAGATTAT 59
|||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1 ATGTCCAACTCTCAAATCGAATCAACTT-GTGCATCTCTTCTACAACAACTTGAGATTAT 59
Query 60 ATGGAAAGAGGTTGGAGAAACTGAAACAGAAAGGGAGAAGATTTTGATTGAGATCGAAGA 119
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 60 ATGGAACGAGGTTGGAGAAACTGAAACAGAAAGGGAGAAGATTTTGATTGAAATCGAAGA 119
Query 120 AGAATGCAGAGAAGTCTACAATCGAAAAATCGAAAAGGTTAAAGAAGAAAAGATTCGGAT 179
||||||| ||||||||||||||||||||||||||||| |||||||||| | |||||||||
Sbjct 120 AGAATGCGGAGAAGTCTACAATCGAAAAATCGAAAAGTTTAAAGAAGAGAGGATTCGGAT 179
Query 180 AAAACAAGAGATTGCTGATTCTGAAGCAAGAGTTATTGATATATGTTCTGTAATGGAAGA 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 180 AAAACAAGAGATTGCTGATTCAGAAGCAAGAGTTATTGATATATGTTCTGTAATGGACGA 239
Query 240 GCCACCAATTCTTGGAAGACACCATCAATCTGATCAACAAAGTGGTAATGGGAGAAGCTT 299
||||||||||||||||||||| |||||||||||||||| || ||||||||||||||
Sbjct 240 GCCACCAATTCTTGGAAGACAACATCAATCTGATCAAC-AA-----AATGGGAGAAGCTT 293
Query 300 GAAAGATGAGTTAGTAAAGATTCTTCAGAAACTTGAAGAAATGGAAAAGAGAAAATCAGA 359
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 294 GAAAGATGAGTTAGTAAAGATTCTTCAGAAACTTGAGGAAATGGAAAAAAGAAAATCAGA 353
Query 360 GAGGAAGATTCAGTTTATTCAAGTAATTGATGATATAAGATGTGTAAGAGAAGAGATTAA 419
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 354 GAGGAAGAAACAGTTTATTCAAGTAATTGAAGATATAAGATGTGTAAGAGATGAGATTAA 413
Query 420 TGGAGAATCTGATGATGAG-ACTTGTTCATCTGATTTTTCT-GCTGATGAATCTGATTTA 477
|||||||||| || | ||| ||||||||||||||||||| | | ||||||||| ||||||
Sbjct 414 TGGAGAATCTTATCA-GAGTACTTGTTCATCTGATTTTT-TGGTTGATGAATCCGATTTA 471
Query 478 TCTCTTAGAAAGCTTGAAGAGTTACATAGAGAGCTTTACACACTTCAAGAACAAAAGAGG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 472 TCTCTTAGAAAGCTTGAAGAGTTACATAGAGAGCTTTACACACTTCAAGAACAGAAGAGA 531
Query 538 AACCGGGTGAAACAGATTCAAGATAATATAAGAACTCTTGAATCGCTTTGTTCGGTTCTT 597
|||||||||||||||||||||||| || ||| |||||| ||||||||| ||||||||||
Sbjct 532 AACCGGGTGAAACAGATTCAAGATCATCTAAAAACTCTCGAATCGCTTAGTTCGGTTCTC 591
Query 598 GGTTTGAATTTTCGAGAAACTGTTACCAAGATTCACCCAAGTTTAGTAG-ATACTGAAGG 656
||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||
Sbjct 592 GGTTTGAATTTTCGAGAAACTGTCACCACGATTCACCCAAGTTTAGTAGAAT-CTGAAGG 650
Query 657 GTCAAGAAGTATAAGTAATGAAACACTTGACAAGTTAGCTTCATCAGTACAACAA-TGGC 715
|||||||||||||||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 651 GTCAAGAAGTATAAGTAATGAAACACTTGACAAGTTAGCTTCATCAATA-AAAAACTGGC 709
Query 716 ATGAGACAAAGATTCAAAGAATGCAAGAACTTCAAGATCTCGTGACAACGATGCTTGAGT 775
|||||| |||||| || |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 710 ATGAGATAAAGATACAGAGAATGCAAGAACTCCAAGATCTCGTGACGACGATGCTTGAGT 769
Query 776 TTTGGAATTTAATGGATACACCAGCAGAAGAACAACAAAAGTTCATGGATGTATCATGTA 835
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 770 TTTGGAATTTAATGGATACACCAGCAGAAGAACAACAAAAGTTCATGGATGTTTCATGTA 829
Query 836 ATATAGCTGCTACTGTTTCTGAAATAACCAAACCCAATAGTCTTTCTATAGATTTGCTAG 895
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 830 ATATAGCGGCTACTGTTTCTGAAATAACCAAACCAAATAGTCTTTCTATAGATTTGCTAG 889
Query 896 AAGAGGTTAAAGCTGAGCTATGTCGGTTGGAGGAGTTGAAGTGGAGCAAAATGAAAGAAC 955
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AAGAGGTTAAAGCTGAGCTGTGTCGGTTGGAGGAGTTGAAGTGGAGCAAAATGAAAGAAC 949
Query 956 TTGTTCTAAAGAAAAGGTCAGAGCTTGAAGAGATATGTAGAAGAACACACATTGTTCTT- 1014
||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 950 TTGTTCTAAAGAAAAGGTCAGAGCTTGAAGAGATATGCAGAAGAACACACATAGTGCTTG 1009
Query 1015 --GAAGAAGAAGATATCGCGGTAGAGAATGTAATCAAAGCCATTGAATCAGGAGATGTGA 1072
|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1010 AAGAAGAAGAAGATATTGCGGTTGAGAATGTAATCAAAGCCATTGAATCGGGAGATGTGA 1069
Query 1073 ACCCTGAAAATATACTAGAACAGATCGAGTATCGAGCTGGGAAAGTGAAAGAGGAAGCTC 1132
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1070 ACCCTGAAAATATACTAGAACAGATCGAATATCGAGCAGGGAAAGTGAAAGAGGAAGCTC 1129
Query 1133 TAAGCAGAAAAGAGATTCTTGAGAAAGCTGATAAATGGTTGAATGCTTGTGAGGAAGAGA 1192
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1130 TAAGCAGAAAAGAGATTCTTGAAAAAGCTGAGAAATGGTTGAATGCTTGTGAGGAAGAGA 1189
Query 1193 ATTGGCTTGAAGAGTATAATCAGGATGAAAACCGATACAACGCTGGAAAAGGATCTCATT 1252
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 ACTGGCTTGAAGAGTATAATCAGGATGAAAACCGATACAACGCTGGAAAAGGATCTCATT 1249
Query 1253 TAATCCTCAAACGCGCAGAGAAAGCTCGTGCACTTGTTAATAAACTTCCAGCTATGGTTG 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TAATCCTCAAACGCGCAGAGAAAGCTCGTGCACTTGTTAATAAACTTCCAGCTATGGTTG 1309
Query 1313 AAGCATTAGCTTCCAAGATTACAATATGGGAATCAGAGAAAGAATATGAGTTTCTCTTTG 1372
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1310 AAGCATTAGCTTCCAAGATTACAATATGGGAATCAGAGAAAGAATCTGAGTTTCTCTTTG 1369
Query 1373 ATGGTAATCGCCTACTTTCAATGCTCGAAGAGTATACGGAACTCAGAGAAGAGAAAGAAC 1432
|||||||||| |||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 1370 ATGGTAATCGTTTACTTTCAATGCTCGAGGAGTATTCTGAACTCAGAGAAGAGAAAGAAC 1429
Query 1433 AAGAACGCCGCAGAAAGAGGGATCTGAAGAAACATCAAGGTCAAGTGACATCAGAGCAAG 1492
||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 1430 AAGAACGCCGCAGAAAGAGGGATCTGAAGAAACTTCAGGGTCAAGTGATATCAGAGCAAG 1489
Query 1493 ACAAAGGAAGTGTTACGAAGCCCCAAAGCGCGAAAAAGGGTCTTAAAGTGTCAACTAACA 1552
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1490 ACAAAGGAAATGTTACGAAGCCTCAAAGCGCGAAAAAGGGTCTTAAAGTGTCAACTAACA 1549
Query 1553 AGAGATTTGTCTCATCACCTCATACTCCTCAAACTGATTCGCCTCACTCAGCAAAATCGA 1612
|||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 1550 AGAGATTTGTCTCATCACCTCATACTCCTCGAGCTGATTCGCCTCAGTCAGCAAAATCGA 1609
Query 1613 ATCAATCGTTTAGTACTCCTCTATCACGCCATGGCTGA 1650
|||||| ||| ||||||||||||||||||| |||||
Sbjct 1610 ATCAATA-TTT--TACTCCTCTATCACGCCATAGCTGA 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61858557880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5