BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62270.2
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg358424 jgi|Araly1|358424|fgenesh1_pg.C_scaffold_8002211 1807 0.0
> Ahg358424 jgi|Araly1|358424|fgenesh1_pg.C_scaffold_8002211
Length=2316
Score = 1807 bits (978), Expect = 0.0
Identities = 1074/1122 (96%), Gaps = 0/1122 (0%)
Strand=Plus/Plus
Query 280 GGATCTGATGGAGTTGGAGGCGATGATAACGGCTGGAATATTTCAACAGGAGGATCATTT 339
||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 1195 GGATCTGATGGAGTTGGAGGCGATGATAATGGTTGGGATATTTCAACAGGAGGATCATTT 1254
Query 340 GGTGGTACAGGATCTGCTGATCTTGATTGGGACAATAAATCTATGTGGTCTACTGGTTTA 399
|||||||||||||||| ||||||||||||||| || |||||||||||||| |||||||||
Sbjct 1255 GGTGGTACAGGATCTGATGATCTTGATTGGGATAACAAATCTATGTGGTCGACTGGTTTA 1314
Query 400 ACTAAGGAGCATTTCGATGGTGTCTCCGTTGGTCGTCAGAAGAACGCGGCGAATCCTTCT 459
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1315 ACCAAGGAGCATTTTGATGGTGTCTCTGTTGGTCGTCAGAAGAACGCGGCGAATCCTTCT 1374
Query 460 TCTGATAACACCCCTTCTGATTCGGGTGATGTAATGAGCAAATTGGGTCCAAAGGAGGTA 519
|||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1375 TCTGATAACACCGCTTCTGATTCGGGTGATGTGATGAGCAAGTTGGGTCCAAAGGAAGTT 1434
Query 520 GCTTTGGTTAATGAAATGAATGAGTATGATGATTTGCTTAAAGAGATTGAGCAAGATAAT 579
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1435 GCTTTGGTTAATGAAATGAACGAGTATGATGATATGCTTAAAGAGATTGAGCAAGATAAT 1494
Query 580 AGGCAAGGCAGGGCTTTTGTTGATGGGATTAAACAGAGAATGATGGAGATCAGTGTGTTG 639
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 AGGCAAGGCAGAGCTTTTGTTGATGGGATTAAACAGAGAATGATGGAGATCAGTGTGTTG 1554
Query 640 TTGAAGCAAGTTAAAGAGCCAGGTGCTAGAGGGTCTTATCTTAAGGACTCTGAGAAGACT 699
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TTGAAGCAAGTGAAAGAGCCTGGTGCTAGAGGGTCTTATCTTAAGGACTCTGAGAAGACT 1614
Query 700 GAGATGTATAGATTGCACAAAGAGAATCCTGAGGTGTATACTATTGAGAGGCTTGCTAAG 759
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1615 GAGATGTATAGATTGCACAAAGAGAATCCTGAGGTGTATACGGTTGAGAGGCTTGCTAAG 1674
Query 760 GATTATAGGATTATGAGGCAGCGTGTTCACGCCATTCTTTTTCTTAAAGAAGATGAAGAA 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675 GATTATAGGATTATGAGGCAGCGTGTTCACGCCATTCTTTTTCTTAAAGAAGATGAAGAA 1734
Query 820 GAAGAGGAGAGGAAGCTTGGTCGTCCTTTGGATGATTCTGTTGACCGTTTGCTTGATGAG 879
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1735 GAAGAGGAGAGGAAGCTTGGTCGTCCCTTGGATGATTCTGTTGAGCGTTTGCTTGATGAG 1794
Query 880 TACCCTGAGTTCTTCATTTCGCATGACCGGGAATTTCATGTGGCCTCACTTAATTACAAA 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 TACCCTGAGTTCTTCATTTCGCATGACCGGGAATTTCATGTGGCCTCACTTAATTACAAA 1854
Query 940 CCCGACTTCAAGGTCATGCCAGAAGGATGGGATGGTACAATCAAAGATATGGATGAAGTC 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 CCCGACTTCAAGGTCATGCCAGAAGGATGGGATGGTACAATCAAAGATATGGATGAAGTC 1914
Query 1000 CATTATGAGATCTCAAAGAAAGAGGATGACATGCTTTACGAAGAATTTGTCCGAAGGTTT 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1915 CATTATGAGATCTCAAAGAAAGAGGATGACATGCTTTACGAAGAATTTGTCCGAAAGTTT 1974
Query 1060 GAGTTCAACAAAATGAAATGGAGAGGAGAAGTGATGTGCCACAAGTACAGCAGGAGACGT 1119
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 1975 GAGTTCAACAAAATGAAATGGAGAGGAGAAGTGAAGTGCCACAAGTACAGTAGGAGGCGT 2034
Query 1120 TCATCAGAGGGATGGAAAATCACGGTTGAGAAATTGGGTGCTAAGGGCAAACGTGGAGCC 1179
|||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 2035 TCATCAGACGGATGGAAAATCACGGTTGAGAAATTGGGTGCTCAGGGAAAACGTGGAGCC 2094
Query 1180 GGAGGTGGCTGGAAGTTTATGAGTCTTCCAGATGGATCAAGCCGACCACTCAACGAAATG 1239
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 2095 GGAGGTGGCTGGAAATTTGTGAGTCTTCCAGATGGATCAAGCCGACCACTCAACGAAGTG 2154
Query 1240 GAGAAGGTCTATGTTAAGCGTGAAACCCCACTACGTCGCCGAAGCATTATATCAACGGAG 1299
|||||| |||||||||||||||||||||| || |||||||||||||| |||| ||||||
Sbjct 2155 GAGAAGATCTATGTTAAGCGTGAAACCCCGCTTCGTCGCCGAAGCATGGTATCGACGGAG 2214
Query 1300 GTGATGCGTTACTCGCCCGCGAACCAGAAGCGGAGGTCGAAGCGGAAACAGAAGCGGAAG 1359
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2215 ATGATGCGTTACTCGCCCGGGAACCAGAAGCGGAGGTCGAAGCGGAAACAGAAGCGGAAG 2274
Query 1360 GAGAGGCGCATAGCATGTCTCAAAGCCGGTAAGCAAACGTGA 1401
||||||||| | | |||||| ||||| || ||||||||||||
Sbjct 2275 GAGAGGCGCGTTGAATGTCTGAAAGCTGGCAAGCAAACGTGA 2316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5