BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62280.1
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
Ahg332462 jgi|Araly1|332462|fgenesh1_pm.C_scaffold_8001805 1066 0.0
> Ahg332462 jgi|Araly1|332462|fgenesh1_pm.C_scaffold_8001805
Length=708
Score = 1066 bits (577), Expect = 0.0
Identities = 668/712 (94%), Gaps = 5/712 (1%)
Strand=Plus/Plus
Query 93 ATGGCTTTTTGGTCTGCTGAGAATGCTACTAAAGCCTATCTTAGTACATTGAAAACGGAT 152
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTTTTGGTCTGCTGAGAATGCTACAAAAGCCTATCTTAGTACATTGAAAACGGAT 60
Query 153 CAAAGGACAAAAGAACCAAACGTCGCCGAATTCATATCAGCCCTAGCCGCCGGAAATAGC 212
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 61 CAAAGGACAAAAGAACCAAACGTGGCCGAATTCATATCAGCCCTAGCGGCCGGCAATAGC 120
Query 213 GCTAGAAAGATAGCCGTGGCTTGCGCCGGAGCAGCAAACGCCGACATACTCGTTGCACTA 272
|| ||||| || || |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 121 GCCAGAAAAATTGCTGTGGCTTGCGCCGGAGCAGCAAACGCGGACATACTCGTTGCCCTA 180
Query 273 ATCGCAGCGGCTAACCAAACGCGTGGTCAAGTTGTATGCGTTTTACGTGGTATCGAAGAA 332
|||||||| || |||||||| || ||||||||||||||||||||||| || || ||||||
Sbjct 181 ATCGCAGCAGCCAACCAAACTCGCGGTCAAGTTGTATGCGTTTTACGCGGCATTGAAGAA 240
Query 333 CTAATCATATCCCAA-AAAATGTTGGAACCATCAGAGATTCATCAGATACAATTCGTAGT 391
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 CTAATCATAT-CCAAGAAAATGTTGGAACCATCAGAGATTCATCAGATACAATTCGTTGT 299
Query 392 CGGAGAATCTAACGACGACACTCTAATCAATAATCATTTCGGAGAAGCAGATTTCGTCCT 451
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||
Sbjct 300 CGGAGAATCTAACGACGACATTCTAATCAATGATCATTTCGGAGAAGCAGATTTCGTTCT 359
Query 452 CGTGGATTGTAACCTCGAAAACCACCAAGAGATCGTTGGAAAAATCCTTAATCATCACGA 511
|||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||
Sbjct 360 CGTGGATTGTAACCTCGAGAACCACCAAGAGATCGTTAGAAAGATCCTTAATCATCACGC 419
Query 512 AGAAAACGCAAGAACCGGGGGTGGAAGCGGTGTGGCGGTTGTGGTGGGTTATAACGCGTT 571
||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 420 AGAAAACGCTAGAACCGGTGGTGGAAGCGGTATGGCGGTTGTGGTGGGTTATAACGCGTT 479
Query 572 TTCGAGAGGGTCATGGAGGTTTAGCGATGGAAGGAAAACGCAGTTTTTACCTATAGGAGA 631
|||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 480 TTCGAGAGGGTCGTGGAGGTTTAGCGATGGTAGGAAAACGCAGTTTTTGCCTATAGGAGA 539
Query 632 AGGGTTACTTGTGACGAGGGTCAATGATAATCAGAAGATGATGATGAAAAATCACCATCG 691
|||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 540 AGGGTTGCTTGTGACGAGGGTCAACGATAATCAGAAGATGCCGATGAAAAATCACCATCG 599
Query 692 TGACCAAGTGATGAGGAAGAGTCGTTGGGTGGTGAAGGTTGATAAGTGCACTGGAGAGGA 751
||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGAGCAA--G-TGAGGAAGAGTCGTTGGGTGGTGAAGGTTGATAAGTGCACTGGAGAGGA 656
Query 752 ACATGTGTTTAGGGTTAGGGTTCCCCGAGGAGAAGCCATTATTGAAGCTTAA 803
|||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 657 ACATGTGTTTAGGGTTAGGGTTCCAAGAGGAGAAGCCATTATTGAGGCTTAA 708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39609710763
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5