BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G62280.1 Length=1064 Score E Sequences producing significant alignments: (Bits) Value Ahg332462 jgi|Araly1|332462|fgenesh1_pm.C_scaffold_8001805 1066 0.0 > Ahg332462 jgi|Araly1|332462|fgenesh1_pm.C_scaffold_8001805 Length=708 Score = 1066 bits (577), Expect = 0.0 Identities = 668/712 (94%), Gaps = 5/712 (1%) Strand=Plus/Plus Query 93 ATGGCTTTTTGGTCTGCTGAGAATGCTACTAAAGCCTATCTTAGTACATTGAAAACGGAT 152 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGGCTTTTTGGTCTGCTGAGAATGCTACAAAAGCCTATCTTAGTACATTGAAAACGGAT 60 Query 153 CAAAGGACAAAAGAACCAAACGTCGCCGAATTCATATCAGCCCTAGCCGCCGGAAATAGC 212 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 61 CAAAGGACAAAAGAACCAAACGTGGCCGAATTCATATCAGCCCTAGCGGCCGGCAATAGC 120 Query 213 GCTAGAAAGATAGCCGTGGCTTGCGCCGGAGCAGCAAACGCCGACATACTCGTTGCACTA 272 || ||||| || || |||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 121 GCCAGAAAAATTGCTGTGGCTTGCGCCGGAGCAGCAAACGCGGACATACTCGTTGCCCTA 180 Query 273 ATCGCAGCGGCTAACCAAACGCGTGGTCAAGTTGTATGCGTTTTACGTGGTATCGAAGAA 332 |||||||| || |||||||| || ||||||||||||||||||||||| || || |||||| Sbjct 181 ATCGCAGCAGCCAACCAAACTCGCGGTCAAGTTGTATGCGTTTTACGCGGCATTGAAGAA 240 Query 333 CTAATCATATCCCAA-AAAATGTTGGAACCATCAGAGATTCATCAGATACAATTCGTAGT 391 |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 241 CTAATCATAT-CCAAGAAAATGTTGGAACCATCAGAGATTCATCAGATACAATTCGTTGT 299 Query 392 CGGAGAATCTAACGACGACACTCTAATCAATAATCATTTCGGAGAAGCAGATTTCGTCCT 451 |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| || Sbjct 300 CGGAGAATCTAACGACGACATTCTAATCAATGATCATTTCGGAGAAGCAGATTTCGTTCT 359 Query 452 CGTGGATTGTAACCTCGAAAACCACCAAGAGATCGTTGGAAAAATCCTTAATCATCACGA 511 |||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| Sbjct 360 CGTGGATTGTAACCTCGAGAACCACCAAGAGATCGTTAGAAAGATCCTTAATCATCACGC 419 Query 512 AGAAAACGCAAGAACCGGGGGTGGAAGCGGTGTGGCGGTTGTGGTGGGTTATAACGCGTT 571 ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 420 AGAAAACGCTAGAACCGGTGGTGGAAGCGGTATGGCGGTTGTGGTGGGTTATAACGCGTT 479 Query 572 TTCGAGAGGGTCATGGAGGTTTAGCGATGGAAGGAAAACGCAGTTTTTACCTATAGGAGA 631 |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 480 TTCGAGAGGGTCGTGGAGGTTTAGCGATGGTAGGAAAACGCAGTTTTTGCCTATAGGAGA 539 Query 632 AGGGTTACTTGTGACGAGGGTCAATGATAATCAGAAGATGATGATGAAAAATCACCATCG 691 |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 540 AGGGTTGCTTGTGACGAGGGTCAACGATAATCAGAAGATGCCGATGAAAAATCACCATCG 599 Query 692 TGACCAAGTGATGAGGAAGAGTCGTTGGGTGGTGAAGGTTGATAAGTGCACTGGAGAGGA 751 ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TGAGCAA--G-TGAGGAAGAGTCGTTGGGTGGTGAAGGTTGATAAGTGCACTGGAGAGGA 656 Query 752 ACATGTGTTTAGGGTTAGGGTTCCCCGAGGAGAAGCCATTATTGAAGCTTAA 803 |||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 657 ACATGTGTTTAGGGTTAGGGTTCCAAGAGGAGAAGCCATTATTGAGGCTTAA 708 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39609710763 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5