BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62290.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496406 jgi|Araly1|496406|fgenesh2_kg.8__2222__AT5G62290.2 1114 0.0
Ahg912186 jgi|Araly1|912186|Al_scaffold_0001_2440 246 2e-64
> Ahg496406 jgi|Araly1|496406|fgenesh2_kg.8__2222__AT5G62290.2
Length=742
Score = 1114 bits (603), Expect = 0.0
Identities = 683/721 (95%), Gaps = 8/721 (1%)
Strand=Plus/Plus
Query 58 ATTCTTTCTTTGTGATCGGAAAAAATGGTGGCTGGTCTAAGAGATTTCACGCTCAGAACC 117
||| ||||||||||||||||||| ||||||| |||||||||||| ||||| |||||||||
Sbjct 23 ATTGTTTCTTTGTGATCGGAAAACATGGTGGTTGGTCTAAGAGAGTTCACACTCAGAACC 82
Query 118 GAAGATGGCTCCGGGAAACCGGTACTGGATGAATCTAACGGCGAGGAACTTATGCACGTT 177
| |||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||
Sbjct 83 GGAGATGGCTCCGGAAAACCGGTTCTGGACGAAGCTAACGGCGAGGAACTTATGCACGTT 142
Query 178 CAGACTTCCGTCGCCGTCGCTCTCGGAAACCGTCCCATTGAGTCTCCCGGAACTCTCTAC 237
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 143 CAGACTTCCGTCGCCGTCGCTCTCGGAAACCTTCCCGTTGAGTCTCCCGGAACTCTCTAC 202
Query 238 ATCACTTCCAGGAAATTAATTTGGCTGAGCGATGTAGACATGGCTAAAGGATACGCAGTT 297
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 203 ATCACTTCCAGGAAATTAATTTGGCTGAGCGATGTAGACATGGCTAAAGGTTATGCAGTT 262
Query 298 GATTTCTTATCAATATCGCTTCACGCTGTTTCTAGAGATCCTGAGGCTTATTCATCTCCT 357
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 GATTTCTTATCGATATCACTTCACGCTGTTTCTAGAGATCCTGAGGCTTATTCATCTCCT 322
Query 358 TGTATATATACTCAGATTGAAG-TTGAAGAAGATGAGGATGATGAGTCTGATTCAGAATC 416
||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||
Sbjct 323 TGTATATATACTCAGATTG-AGATTGAAGAAGATGAGGATGATGAGTCTGATACAGAATC 381
Query 417 --C-ACTGAAGTTTTGGACTTATCAAAGATCAGAGAGATGAGGCTTGTTCCTTCTGACTC 473
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 382 ATCTACTGAAGTTTTGGACTTATCAAATATCAGAGAGATGAGGCTTGTTCCTTCTGACCC 441
Query 474 TACCCAGTTGGAGACGCTGTTTGATGTATTCTGCGAGTGTGCTGAGCTGAATCCTGAACC 533
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 TTCCCAGTTGGAGACGCTGTTTGATGTATTCTGCGAGTGTGCTGAGCTGAATCCTGAACC 501
Query 534 AGTTCaagaagaagaagaagaaagCGGACATAATTGGGTGTTTAGTGCTGATCAGATGGA 593
|||| |||||||||||||||| | || ||||||||||||||||||||||||||||||||
Sbjct 502 AGTTGAAGAAGAAGAAGAAGACCGTGGGCATAATTGGGTGTTTAGTGCTGATCAGATGGA 561
Query 594 TGTTCGTGGA-G-G-AGATGATGATGCAGAGTGGCAAATATCTCAGAGTCCGACTAGTGT 650
|||||||||| | | |||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 562 TGTTCGTGGAGGAGCAGATGAAGATGCAGAATGGCAAATATCTCAGAGTCCGACAAGTGT 621
Query 651 AATTGGTCATTCCAATGGAGATGAAGGTCTTAATCAGCCTATGCTTGAGCTCCAAATCAA 710
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 622 AATTGGTCATTCCAATGGAGATGAAGGTCTTGCTCAGCCTATGCTTGAGCTCCAAATCAA 681
Query 711 TGATCAGAGGTTTGAGGATGCTGAAGAGATGGTTCATGAAAGTGAGACCAAAGATCACTA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TGATCAGAGGTTTGAGGATGCTGAAGAGATGGTTCATGAAAGTGAGACCAAAGATCACTA 741
Query 771 G 771
|
Sbjct 742 G 742
> Ahg912186 jgi|Araly1|912186|Al_scaffold_0001_2440
Length=204
Score = 246 bits (133), Expect = 2e-64
Identities = 151/159 (95%), Gaps = 3/159 (2%)
Strand=Plus/Plus
Query 540 agaagaagaagaagaaagCGGACATAATTGGGTGTTTAGTGCTGATCAGATGGATGTTCG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 AGAAGAAGAAGAAGAAAGCGGACATAATTGGGTGTTTAGTGCTGATCAGATGGATGTTCG 80
Query 600 TGGAGGAG-A--TGATGATGCAGAGTGGCAAATATCTCAGAGTCCGACTAGTGTAATTGG 656
|||||||| | ||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 81 TGGAGGAGCACATGAAGATGCAGAATGGCAAATATCTCAGAGTCCGACAAGTGTAATTGG 140
Query 657 TCATTCCAATGGAGATGAAGGTCTTAATCAGCCTATGCT 695
||||||||||||||||||||||||| ||||||||||||
Sbjct 141 TCATTCCAATGGAGATGAAGGTCTTGCTCAGCCTATGCT 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5