BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G62300.1
Length=658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg496408 jgi|Araly1|496408|fgenesh2_kg.8__2224__AT5G62300.1 686 0.0
Ahg950998 jgi|Araly1|950998|scaffold_802885.1 531 3e-150
Ahg937471 jgi|Araly1|937471|scaffold_501662.1 412 1e-114
> Ahg496408 jgi|Araly1|496408|fgenesh2_kg.8__2224__AT5G62300.1
Length=595
Score = 686 bits (371), Expect = 0.0
Identities = 445/481 (93%), Gaps = 4/481 (1%)
Strand=Plus/Plus
Query 1 CGTCTCTTAGGTTAAATCATTCGACTCCTTCCTTCCTTGCAGCAAAAAGCAATCCGCCGT 60
|||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1 CGTCTCTTAGGTTAAAACATTCCAGTCCTTCCTTCCTTGCAGCAAAAAGCAATCCGCCGT 60
Query 61 CGAGCTTCGTTCGTCTCTCAGAAGAAGCTGCAAATATGGCGACAG-CGTATCAACCAATG 119
| |||||||||||||||||||||||||||| ||| || ||| | ||||||||||||||
Sbjct 61 CAAGCTTCGTTCGTCTCTCAGAAGAAGCTG-AAAAAT-ATGAC-GTCGTATCAACCAATG 117
Query 120 AAACCAGGGAAGGCTGGTTTGGAAGAGCCACTCGAGCAGATTCACAAGATCAGAATTACT 179
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 118 AAACCAGGAAAGGCTGGTTTGGAAGAACCACTCGAGCAGATTCACAAGATCAGGATTACT 177
Query 180 CTCTCCTCCAAGAATGTCAAGAACTTGGAAAAAGTGTGTACTGATTTGGTTCGTGGAGCT 239
||||| |||||||||||||||||| | || |||||||| ||||||||||| ||||||||
Sbjct 178 CTCTCTTCCAAGAATGTCAAGAACCTCGAGAAAGTGTGCACTGATTTGGTCCGTGGAGCC 237
Query 240 AAGGACAAGAGACTGAGAGTTAAGGGTCCAGTCAGAATGCCCACCAAGGTTCTCAAGATC 299
|||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||
Sbjct 238 AAGGACAAGAGACTCAGAGTCAAGGGACCAGTGAGAATGCCCACCAAGGTTCTTAAGATC 297
Query 300 ACTACCCGTAAAGCTCCTTGTGGTGAAGGAACCAACACATGGGACAGATTCGAGCTTAGG 359
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 298 ACTACCCGAAAAGCTCCTTGTGGTGAAGGAACCAACACATGGGACAGATTTGAACTTCGG 357
Query 360 GTACACAAGCGAGTTATAGATCTTTTCAGCTCTCCTGATGTGGTCAAGCAGATCACCTCC 419
|||||||||||||| || ||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 358 GTACACAAGCGAGTGATTGATCTCTTCAGTTCTCCTGATGTGGTCAAGCAGATCACTTCC 417
Query 420 ATCACCATTGAACCTGGTGTTGAAGTTGAGGTCACCATCGCTGACTCGTAGATCAACCCT 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 ATCACCATTGAACCTGGTGTTGAAGTTGAGGTCACCATCGCCGACTCGTAGATCAACCCT 477
Query 480 T 480
|
Sbjct 478 T 478
> Ahg950998 jgi|Araly1|950998|scaffold_802885.1
Length=416
Score = 531 bits (287), Expect = 3e-150
Identities = 361/397 (91%), Gaps = 3/397 (1%)
Strand=Plus/Plus
Query 78 TCAGAAGAAGCTG-CAAATATGGCGACAGCGT-ATCAACCAATGAAACCAGGGAAGGCTG 135
||||||||||||| ||||||| |||| | | | ||||||||||||||||| |||||||
Sbjct 3 TCAGAAGAAGCTGAAAAATATGACGAC-GTATCAACAACCAATGAAACCAGGAAAGGCTG 61
Query 136 GTTTGGAAGAGCCACTCGAGCAGATTCACAAGATCAGAATTACTCTCTCCTCCAAGAATG 195
|||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 62 GTTTGGAAGAGCCACTCGAGCAGATTCATAAGATCAGGATTACTCTATCCTCCAAGAATG 121
Query 196 TCAAGAACTTGGAAAAAGTGTGTACTGATTTGGTTCGTGGAGCTAAGGACAAGAGACTGA 255
|||||||| | || |||||||| ||||| |||||||||||||| |||||||||||||| |
Sbjct 122 TCAAGAACCTCGAGAAAGTGTGCACTGACTTGGTTCGTGGAGCCAAGGACAAGAGACTTA 181
Query 256 GAGTTAAGGGTCCAGTCAGAATGCCCACCAAGGTTCTCAAGATCACTACCCGTAAAGCTC 315
|||| ||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 182 GAGTCAAGGGTCCAGTGAGAATGCCCACCAAGGTTCTTAAGATCACCACCCGAAAAGCTC 241
Query 316 CTTGTGGTGAAGGAACCAACACATGGGACAGATTCGAGCTTAGGGTACACAAGCGAGTTA 375
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 242 CTTGTGGTGAAGGAACTAATACATGGGACAGATTCGAGCTTAGGGTACACAAGCGAGTGA 301
Query 376 TAGATCTTTTCAGCTCTCCTGATGTGGTCAAGCAGATCACCTCCATCACCATTGAACCTG 435
| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 302 TTGATCTCTTCAGCTCTCCTGATGTGGTCAAGCAAATCACATCCATCACCATTGAACCTG 361
Query 436 GTGTTGAAGTTGAGGTCACCATCGCTGACTCGTAGAT 472
||||||| || |||||||||||||| || || |||||
Sbjct 362 GTGTTGAGGTCGAGGTCACCATCGCCGATTCTTAGAT 398
> Ahg937471 jgi|Araly1|937471|scaffold_501662.1
Length=409
Score = 412 bits (223), Expect = 1e-114
Identities = 324/373 (87%), Gaps = 5/373 (1%)
Strand=Plus/Plus
Query 105 GCGTATCAACCAATGAAA-CCAGGGAAGGCTGGTTTGGAAGAGCCACTCGAGCAGATTCA 163
|||||| |||| |||||| ||| || |||||||| ||||| || |||| |||||||||
Sbjct 24 GCGTATGAACCGATGAAACCCA-CTAAAGCTGGTTTAGAAGAACCCCTCGTGCAGATTCA 82
Query 164 CAAGATCAGAATTACTCTCTCCTCCAAGAATGTCAAGAACTTGGAAAAAGTGTGTACTGA 223
|||||||| || |||||||| || || |||||||||||||||||||||||||| |||||
Sbjct 83 TAAGATCAGGATCACTCTCTCTTCAAAAAATGTCAAGAACTTGGAAAAAGTGTGCACTGA 142
Query 224 TTTGGTTCGTGGAGCTAAGGACAAGAGACTGAGAGTTAAGGGTCCAGTCAGAATGCCCAC 283
||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 143 CTTGGTTCGTGGAGCTAAGGACAAGAGACTTAGAGTTAAGGGACCAGTGAGAATGCCCAC 202
Query 284 CAAGGTTCTCAAGATCACTACCCGTAAAG-CTCCTTGTGGTGAAGGAACCAACACATGGG 342
|||||||| |||||||| ||| | |||| | |||||||||||||| ||||| || ||||
Sbjct 203 TAAGGTTCTTAAGATCACCACCAG-AAAGGCACCTTGTGGTGAAGGTACCAATACTTGGG 261
Query 343 ACAGATTCGAGCTTAGGGTACACAAGCGAGTTATAGATCTTTTCAGCTCTCCTGATGTGG 402
||||||| || |||||||| |||||||| || || ||||| |||||||| ||||||||||
Sbjct 262 ACAGATTTGAACTTAGGGTTCACAAGCGTGTGATCGATCTCTTCAGCTCCCCTGATGTGG 321
Query 403 TCAAGCAGATCACCTCCATCACCATTGAACCTGGTGTTGAAGTTGAGGTCACCATCGCTG 462
| ||||| ||||| || ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 322 TTAAGCAAATCACATCTATCACCATTGAACCTGGTGTTGAGGTTGAGGTCACTATTGCTG 381
Query 463 ACTCGTAGATCAA 475
|||| |||| |||
Sbjct 382 ACTCTTAGA-CAA 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24131806461
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5